RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 METTL12A8MUP2 240 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 CCL22O00626 93 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 CTIFO43310 598 aaKnown RBP12.2□□□□□ -0.46
SDC1-206ENST00000482879 HRO43593 1189 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 USP1O94782 785 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 TTC4O95801 387 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 IGHV4-34P06331 123 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 PSMA3P25788 255 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 SPAM1P38567 509 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 ARSDP51689 593 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 PTPN5P54829 565 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 SLMAPQ14BN4 828 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 AGERQ15109 404 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 SETMARQ53H47 684 aaPredicted RBP12.2□□□□□ -0.46
SDC1-206ENST00000482879 SPANXN3Q5MJ09 141 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 ZDHHC20Q5W0Z9 365 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 UNC5AQ6ZN44 842 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 TMEM135Q86UB9 458 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 C11orf74Q86VG3 221 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 TMEFF1Q8IYR6 380 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 GPR26Q8NDV2 337 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 OR13J1Q8NGT2 312 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 SNX19Q92543 992 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 SCAMP4Q969E2 229 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 HDAC10Q969S8 669 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 BIRC7Q96CA5 298 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 AP2M1Q96CW1 435 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 TBATAQ96M53 351 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 FCRL3Q96P31 734 aaPredicted RBP12.2□□□□□ -0.46
SDC1-206ENST00000482879 C19orf43Q9BQ61 176 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 RIOK2Q9BVS4 552 aaKnown RBP12.2□□□□□ -0.46
SDC1-206ENST00000482879 CDH19Q9H159 772 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 SUDS3Q9H7L9 328 aaPredicted RBP12.2□□□□□ -0.46
SDC1-206ENST00000482879 IL26Q9NPH9 171 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 TREX1Q9NSU2 369 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 PLXNB3Q9ULL4 1909 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 CCDC162PA2VCL2 907 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 C10orf142B7Z368 130 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 DLL1O00548 723 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 LATO43561 262 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 VAPBO95292 243 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 PAMP19021 973 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 CNR2P34972 360 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 NUDT1P36639 197 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 DCDC1P59894 354 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 PRAMEP78395 509 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 ACVR1Q04771 509 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 CRYMQ14894 314 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 LRRC14Q15048 493 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 CHRNA6Q15825 494 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 WSCD2Q2TBF2 565 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 FAM151BQ6UXP7 276 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 CAPN12Q6ZSI9 719 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 CEP68Q76N32 757 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 ZNF765Q7L2R6 523 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 LPCAT2Q7L5N7 544 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 RELL1Q8IUW5 271 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.19□□□□□ -0.46
SDC1-206ENST00000482879 ZBTB44Q8NCP5 570 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 OR6P1Q8NGX9 317 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 FOXJ1Q92949 421 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 LENG8Q96PV6 779 aaPredicted RBP12.19□□□□□ -0.46
SDC1-206ENST00000482879 PLEKHG4BQ96PX9 1271 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 SPATA16Q9BXB7 569 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 DUSP15Q9H1R2 295 aaPredicted RBP12.19□□□□□ -0.46
SDC1-206ENST00000482879 FZD3Q9NPG1 666 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 NFKBIL1Q9UBC1 381 aaPredicted RBP12.19□□□□□ -0.46
SDC1-206ENST00000482879 APPL1Q9UKG1 709 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.19□□□□□ -0.46
SDC1-206ENST00000482879 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.19□□□□□ -0.46
SDC1-206ENST00000482879 FAM169AQ9Y6X4 670 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 CACNA1HO95180 2353 aa12.19□□□□□ -0.46
SDC1-206ENST00000482879 PIKFYVEQ9Y2I7 2098 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 GLYATL1P3A0A0U1RQE8 302 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 ZCWPW2A0A1B0GU75 182 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 A0A1W2PPC4 97 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 MEI4A8MW99 385 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 H7C0S8 307 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 RAD51BO15315 384 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 SRP72O76094 671 aaKnown RBP12.18□□□□□ -0.46
SDC1-206ENST00000482879 GOT2P00505 430 aaKnown RBP12.18□□□□□ -0.46
SDC1-206ENST00000482879 PCCBP05166 539 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 GSTA2P09210 222 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 HNRNPA2B1P22626 353 aaKnown RBP12.18□□□□□ -0.46
SDC1-206ENST00000482879 SSTR1P30872 391 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 AKT2P31751 481 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 MC4RP32245 332 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 GPR1P46091 355 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 XIAPP98170 497 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 DPTQ07507 201 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 PEX6Q13608 980 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 IRF4Q15306 451 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 KYNUQ16719 465 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 LONRF1Q17RB8 773 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 ZRANB3Q5FWF4 1079 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 HENMT1Q5T8I9 393 aaKnown RBP12.18□□□□□ -0.46
SDC1-206ENST00000482879 STEAP4Q687X5 459 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 RAET1GQ6H3X3 334 aa12.18□□□□□ -0.46
SDC1-206ENST00000482879 KIAA0930Q6ICG6 404 aaPredicted RBP12.18□□□□□ -0.46
SDC1-206ENST00000482879 C3orf62Q6ZUJ4 267 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms