RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 KIAA1161Q6NSJ0 714 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 KIAA1211LQ6NV74 962 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 TRMT10BQ6PF06 316 aaKnown RBP10.14□□□□□ -0.79
USP39-215ENST00000481409 CES3Q6UWW8 571 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 TIFABQ6ZNK6 161 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 SNX20Q7Z614 316 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 CILP2Q8IUL8 1156 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 TRAM1L1Q8N609 369 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 PPM1NQ8N819 430 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 PJA1Q8NG27 643 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 OR13C4Q8NGS5 318 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 CXorf40AQ8TE69 158 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 DCAKDQ8WVC6 231 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 ALKBH8Q96BT7 664 aaKnown RBP10.14□□□□□ -0.79
USP39-215ENST00000481409 MRGPRX1Q96LB2 322 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 TBATAQ96M53 351 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 ZSCAN5AQ9BUG6 496 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 C1QTNF7Q9BXJ2 289 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 CHRDQ9H2X0 955 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 SGK2Q9HBY8 427 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 TMBIM4Q9HC24 238 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 CATSPERZQ9NTU4 200 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 POLR3BQ9NW08 1133 aaPredicted RBP10.14□□□□□ -0.79
USP39-215ENST00000481409 SMOXQ9NWM0 555 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 SLC2A6Q9UGQ3 507 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 FBXO5Q9UKT4 447 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 FADS3Q9Y5Q0 445 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 C5orf42Q9H799 3197 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 SCN8AQ9UQD0 1980 aa10.14□□□□□ -0.79
USP39-215ENST00000481409 TRBV5-4A0A0C4DH59 114 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 GLYATL1P3A0A0U1RQE8 302 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 CCDC162PA2VCL2 907 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 POC1B-GALNT4F8VUJ3 575 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 QSOX1O00391 747 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 NEMP1O14524 444 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 AURKAO14965 403 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 SRP72O76094 671 aaKnown RBP10.13□□□□□ -0.79
USP39-215ENST00000481409 PRKCGP05129 697 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 PIRTP0C851 137 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 BPIP17213 487 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 CD9P21926 228 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 PMLP29590 882 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 MC4RP32245 332 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 FOXN2P32314 431 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 WASP42768 502 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 PTGER3P43115 390 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 CLCN5P51795 746 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 LIMK2P53671 638 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 RPS21P63220 83 aaKnown RBP10.13□□□□□ -0.79
USP39-215ENST00000481409 XIAPP98170 497 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 FZD5Q13467 585 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 ITIH4Q14624 930 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 ZNF284Q2VY69 593 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 PACS1Q6VY07 963 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 TECPR1Q7Z6L1 1165 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 LCA5Q86VQ0 697 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 HDDC3Q8N4P3 179 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 AADATQ8N5Z0 425 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 UHMK1Q8TAS1 419 aaKnown RBP10.13□□□□□ -0.79
USP39-215ENST00000481409 ACMSDQ8TDX5 336 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 EDAQ92838 391 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 EID2BQ96D98 161 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 CABS1Q96KC9 395 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 COQ10AQ96MF6 247 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 VPS35Q96QK1 796 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 RBBP8Q99708 897 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 MCMBPQ9BTE3 642 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 FAM126AQ9BYI3 521 aaPredicted RBP10.13□□□□□ -0.79
USP39-215ENST00000481409 MKRN2Q9H000 416 aaKnown RBP10.13□□□□□ -0.79
USP39-215ENST00000481409 PCED1AQ9H1Q7 454 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 RHOJQ9H4E5 214 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 FAM83DQ9H4H8 585 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 TBC1D17Q9HA65 648 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 SSU72Q9NP77 194 aaKnown RBP10.13□□□□□ -0.79
USP39-215ENST00000481409 ITM2CQ9NQX7 267 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 IARS2Q9NSE4 1012 aaKnown RBP10.13□□□□□ -0.79
USP39-215ENST00000481409 FBXL12Q9NXK8 326 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 USP36Q9P275 1121 aaKnown RBP10.13□□□□□ -0.79
USP39-215ENST00000481409 SIT1Q9Y3P8 196 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 XIRP2A4UGR9 3374 aa10.13□□□□□ -0.79
USP39-215ENST00000481409 A0A1W2PP55 124 aa10.12□□□□□ -0.79
USP39-215ENST00000481409 TCRBV21S2A2A0A5A6 115 aa10.12□□□□□ -0.79
USP39-215ENST00000481409 TLDC2A0PJX2 215 aa10.12□□□□□ -0.79
USP39-215ENST00000481409 LRRC72A6NJI9 287 aa10.12□□□□□ -0.79
USP39-215ENST00000481409 CXorf49A8MYA2 514 aaPredicted RBP10.12□□□□□ -0.79
USP39-215ENST00000481409 H3BMM5 538 aa10.12□□□□□ -0.79
USP39-215ENST00000481409 TOR1BO14657 336 aa10.12□□□□□ -0.79
USP39-215ENST00000481409 NDUFS3O75489 264 aa10.12□□□□□ -0.79
USP39-215ENST00000481409 RNASEH2AO75792 299 aaKnown RBP10.12□□□□□ -0.79
USP39-215ENST00000481409 TM7SF2O76062 418 aa10.12□□□□□ -0.79
USP39-215ENST00000481409 PRAMEF1O95521 474 aa10.12□□□□□ -0.79
USP39-215ENST00000481409 C1SP09871 688 aa10.12□□□□□ -0.79
USP39-215ENST00000481409 COL9A1P20849 921 aa10.12□□□□□ -0.79
USP39-215ENST00000481409 CD72P21854 359 aa10.12□□□□□ -0.79
USP39-215ENST00000481409 RPS3P23396 243 aaKnown RBP eCLIP10.12□□□□□ -0.79
USP39-215ENST00000481409 GCAP28676 217 aa10.12□□□□□ -0.79
USP39-215ENST00000481409 HOXA6P31267 233 aa10.12□□□□□ -0.79
USP39-215ENST00000481409 CD151P48509 253 aa10.12□□□□□ -0.79
USP39-215ENST00000481409 LIG3P49916 1009 aa10.12□□□□□ -0.79
USP39-215ENST00000481409 ARSDP51689 593 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms