RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 STRADBQ9C0K7 418 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 TRNAU1APQ9NX07 287 aaKnown RBP18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 GOLGA6AQ9NYA3 693 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 TAAR2Q9P1P5 351 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 AMACRQ9UHK6 382 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 TLN1Q9Y490 2541 aaKnown RBP18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 CAPN8A6NHC0 703 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 PRLP01236 227 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 IVLP07476 585 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 KRT7P08729 469 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 CCNCP24863 283 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 AK4P27144 223 aaPredicted RBP18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 MAN1A1P33908 653 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 STC1P52823 247 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 B4GALNT1Q00973 533 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 NIPAL4Q0D2K0 466 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 ILF3Q12906 894 aaKnown RBP eCLIP18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 SLC10A2Q12908 348 aaPredicted RBP18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 ADAMTSL4Q6UY14 1074 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 ZNF438Q7Z4V0 828 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 SLITRK4Q8IW52 837 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 FBXO39Q8N4B4 442 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 SCAMP4Q969E2 229 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 CCDC97Q96F63 343 aaPredicted RBP18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 SCARF2Q96GP6 870 aaPredicted RBP18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 TMEM74Q96NL1 305 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 ABCG8Q9H221 673 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 RBM22Q9NW64 420 aaKnown RBP eCLIP18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 DTLQ9NZJ0 730 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 CHKBQ9Y259 395 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 TTLL3Q9Y4R7 772 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 PCDHGA7Q9Y5G6 932 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 COL6A6A6NMZ7 2263 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 FLNBO75369 2602 aaKnown RBP18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 BSNQ9UPA5 3926 aa18.73■□□□□ 0.59
CCDC88B-206ENST00000473405 ERVH48-1M5A8F1 160 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 H2AFZP0C0S5 128 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 ZNF30P17039 623 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 SLC5A2P31639 672 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 ADCY8P40145 1251 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 CTBSQ01459 385 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 VAC14Q08AM6 782 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 NR1D2Q14995 579 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 DOK6Q6PKX4 331 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 SLC30A9Q6PML9 568 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 H2AFVQ71UI9 128 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 ZNF765Q7L2R6 523 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 TRIM74Q86UV6 250 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 MAP7D3Q8IWC1 876 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 ZDHHC1Q8WTX9 485 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 PATE1Q8WXA2 126 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 RAPGEF5Q92565 580 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 AP2M1Q96CW1 435 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 HDAC11Q96DB2 347 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 AGAP2Q99490 1192 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 LOXL2Q9Y4K0 774 aa18.72■□□□□ 0.59
CCDC88B-206ENST00000473405 ECEL1O95672 775 aa18.71■□□□□ 0.59
CCDC88B-206ENST00000473405 TPM3P06753 285 aa18.71■□□□□ 0.59
CCDC88B-206ENST00000473405 MMP2P08253 660 aa18.71■□□□□ 0.59
CCDC88B-206ENST00000473405 TMEM253P0C7T8 217 aa18.71■□□□□ 0.59
CCDC88B-206ENST00000473405 KRT10P13645 584 aa18.71■□□□□ 0.59
CCDC88B-206ENST00000473405 CES1P23141 567 aa18.71■□□□□ 0.59
CCDC88B-206ENST00000473405 GPR1P46091 355 aa18.71■□□□□ 0.59
CCDC88B-206ENST00000473405 EPHB1P54762 984 aa18.71■□□□□ 0.59
CCDC88B-206ENST00000473405 COX14Q96I36 57 aa18.71■□□□□ 0.59
CCDC88B-206ENST00000473405 PISDQ9UG56 409 aa18.71■□□□□ 0.59
CCDC88B-206ENST00000473405 LCMT1Q9UIC8 334 aa18.71■□□□□ 0.59
CCDC88B-206ENST00000473405 ACSL6Q9UKU0 697 aa18.71■□□□□ 0.59
CCDC88B-206ENST00000473405 TMEM98Q9Y2Y6 226 aa18.71■□□□□ 0.59
CCDC88B-206ENST00000473405 PLEKHM1Q9Y4G2 1056 aa18.71■□□□□ 0.59
CCDC88B-206ENST00000473405 SSU72P8A0A1W2PR75 194 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 C3orf70A6NLC5 250 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 K7ENP7 123 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 B4GAT1O43505 415 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 ITIH1P19827 911 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 MX2P20592 715 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 KDELR1P24390 212 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 OR1D5P58170 312 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 RHDQ02161 417 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 TRIM14Q14142 442 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 INO80CQ6PI98 192 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 NLRP8Q86W28 1048 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 NAGSQ8N159 534 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 NDUFAF2Q8N183 169 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 PLD5Q8N7P1 536 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 LPCAT1Q8NF37 534 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 OR8K1Q8NGG5 319 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 RNF157Q96PX1 679 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 LYSMD1Q96S90 227 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 CDH19Q9H159 772 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 SEMA6CQ9H3T2 930 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 RDH14Q9HBH5 336 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 PCDH9Q9HC56 1237 aa18.7■□□□□ 0.58
CCDC88B-206ENST00000473405 KCNK1O00180 336 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 AGRPO00253 132 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 CLDN7O95471 211 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 JMJD7P0C870 316 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 CA4P22748 312 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 ETV5P41161 510 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms