RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 PDHA1P08559 390 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 ZNF30P17039 623 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 IL4RP24394 825 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 ADCY8P40145 1251 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 POLD2P49005 469 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 MAPK10P53779 464 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 OR1D5P58170 312 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 CTBSQ01459 385 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 DPYSL3Q14195 570 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 TGIF1Q15583 401 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 NCBP2-AS2Q69YL0 99 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 TMPRSS9Q7Z410 1059 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 TECPR1Q7Z6L1 1165 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.69■□□□□ 0.74
COL9A3-210ENST00000472880 FAM71BQ8TC56 605 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 PTCD2Q8WV60 388 aaKnown RBP19.69■□□□□ 0.74
COL9A3-210ENST00000472880 OR2M4Q96R27 311 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 SEMA4CQ9C0C4 833 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 SEMA6CQ9H3T2 930 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 SEPT10Q9P0V9 454 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 DNPEPQ9ULA0 475 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 CAPN11Q9UMQ6 739 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 LUC7L2Q9Y383 392 aaKnown RBP19.69■□□□□ 0.74
COL9A3-210ENST00000472880 ATMQ13315 3056 aa19.69■□□□□ 0.74
COL9A3-210ENST00000472880 A0A0J9YYE9 177 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 A0A0U1RQS6 177 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 B4GAT1O43505 415 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 TRBC1P01850 177 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 PYGLP06737 847 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 CA4P22748 312 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 ETV5P41161 510 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 ACTR1BP42025 376 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 ACTR1AP61163 376 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 DSC2Q02487 901 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 NR1D2Q14995 579 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 PAFAH1B3Q15102 231 aaKnown RBP19.68■□□□□ 0.74
COL9A3-210ENST00000472880 IFI16Q16666 785 aaKnown RBP19.68■□□□□ 0.74
COL9A3-210ENST00000472880 CLPPQ16740 277 aaPredicted RBP19.68■□□□□ 0.74
COL9A3-210ENST00000472880 ADAMTSL4Q6UY14 1074 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 ZNF765Q7L2R6 523 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 MAML1Q92585 1016 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 USP7Q93009 1102 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 ZNF670Q9BS34 389 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 ABCG8Q9H221 673 aa19.68■□□□□ 0.74
COL9A3-210ENST00000472880 UNC13CQ8NB66 2214 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 GOLGA6L19H0YKK7 550 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 MATN3O15232 486 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 MAP3K6O95382 1288 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 SOD1P00441 154 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 CES1P23141 567 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 GPR3P46089 330 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 ARSEP51690 589 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 C16orf72Q14CZ0 275 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 TMEM164Q5U3C3 297 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 ALG1LQ6GMV1 187 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 RFLNAQ6ZTI6 216 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 USP53Q70EK8 1073 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 TRIM74Q86UV6 250 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 NAGSQ8N159 534 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 KCTD6Q8NC69 237 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 PATE1Q8WXA2 126 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 SCAMP4Q969E2 229 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 MED8Q96G25 268 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 SMIM14Q96QK8 99 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 NUDT22Q9BRQ3 303 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 TDRD1Q9BXT4 1180 aaKnown RBP19.67■□□□□ 0.74
COL9A3-210ENST00000472880 ZMYND15Q9H091 742 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 RBM22Q9NW64 420 aaKnown RBP eCLIP19.67■□□□□ 0.74
COL9A3-210ENST00000472880 FOXJ2Q9P0K8 574 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 CTTNBP2NLQ9P2B4 639 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 AMACRQ9UHK6 382 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 TMEM98Q9Y2Y6 226 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 PCDHB11Q9Y5F2 797 aa19.67■□□□□ 0.74
COL9A3-210ENST00000472880 ARHGEF17Q96PE2 2063 aaPredicted RBP19.67■□□□□ 0.74
COL9A3-210ENST00000472880 HGSO14964 777 aaPredicted RBP19.66■□□□□ 0.74
COL9A3-210ENST00000472880 ZIC2O95409 532 aaPredicted RBP19.66■□□□□ 0.74
COL9A3-210ENST00000472880 GYPCP04921 128 aa19.66■□□□□ 0.74
COL9A3-210ENST00000472880 CCNCP24863 283 aa19.66■□□□□ 0.74
COL9A3-210ENST00000472880 CD82P27701 267 aa19.66■□□□□ 0.74
COL9A3-210ENST00000472880 PDK2Q15119 407 aa19.66■□□□□ 0.74
COL9A3-210ENST00000472880 ATP13A4Q4VNC1 1196 aa19.66■□□□□ 0.74
COL9A3-210ENST00000472880 ANKRD20A8PQ5CZ79 823 aa19.66■□□□□ 0.74
COL9A3-210ENST00000472880 MANEAQ5SRI9 462 aa19.66■□□□□ 0.74
COL9A3-210ENST00000472880 ZFYVE27Q5T4F4 411 aa19.66■□□□□ 0.74
COL9A3-210ENST00000472880 MARK2Q7KZI7 788 aaKnown RBP19.66■□□□□ 0.74
COL9A3-210ENST00000472880 GALNT13Q8IUC8 556 aa19.66■□□□□ 0.74
COL9A3-210ENST00000472880 MAP7D3Q8IWC1 876 aa19.66■□□□□ 0.74
COL9A3-210ENST00000472880 SGF29Q96ES7 293 aa19.66■□□□□ 0.74
COL9A3-210ENST00000472880 SCARF2Q96GP6 870 aaPredicted RBP19.66■□□□□ 0.74
COL9A3-210ENST00000472880 CHKBQ9Y259 395 aa19.66■□□□□ 0.74
COL9A3-210ENST00000472880 ST14Q9Y5Y6 855 aa19.66■□□□□ 0.74
COL9A3-210ENST00000472880 C9orf172C9J069 976 aa19.65■□□□□ 0.74
COL9A3-210ENST00000472880 EFSO43281 561 aa19.65■□□□□ 0.74
COL9A3-210ENST00000472880 PROSCO94903 275 aa19.65■□□□□ 0.74
COL9A3-210ENST00000472880 MX2P20592 715 aa19.65■□□□□ 0.74
COL9A3-210ENST00000472880 STC1P52823 247 aa19.65■□□□□ 0.74
COL9A3-210ENST00000472880 PTSQ03393 145 aa19.65■□□□□ 0.74
COL9A3-210ENST00000472880 SRSF6Q13247 344 aaKnown RBP19.65■□□□□ 0.74
COL9A3-210ENST00000472880 ZFAND4Q86XD8 727 aa19.65■□□□□ 0.74
COL9A3-210ENST00000472880 CPNE8Q86YQ8 564 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms