RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 AFF4Q9UHB7 1163 aaKnown RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 NDRG4Q9ULP0 352 aaKnown RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 LTBP3Q9NS15 1303 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 C2orf71A6NGG8 1288 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 AGAP14A8MT82 685 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 DYRK3O43781 588 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 ITGAMP11215 1152 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 KCNE1P15382 129 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 CKMT2P17540 419 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 HRH2P25021 359 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 GGT5P36269 586 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 NNMTP40261 264 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 GP2P55259 537 aaKnown RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 FBXW4P57775 412 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 C1QTNF8P60827 252 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 STX1BP61266 288 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 NOGQ13253 232 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 CNGA3Q16281 694 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 YIF1BQ5BJH7 314 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 CES5AQ6NT32 575 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 FAHD1Q6P587 224 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 CNSTQ6PJW8 725 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 KDELC1Q6UW63 502 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 TRILQ7L0X0 811 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 CMTR2Q8IYT2 770 aaKnown RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 NSUN6Q8TEA1 469 aaKnown RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 ZC3HAV1LQ96H79 300 aaKnown RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 TMEM176AQ96HP8 235 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 FAM213AQ9BRX8 229 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 TUBB1Q9H4B7 451 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 FBXL12Q9NXK8 326 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 OSGIN1Q9UJX0 560 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 VWA5AO00534 786 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 PFDN6O15212 129 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 XPOTO43592 962 aaKnown RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 NUAK1O60285 661 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 TBC1D4O60343 1298 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 KATNA1O75449 491 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 GOT2P00505 430 aaKnown RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 SLURP2P0DP57 97 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 TIAL1Q01085 375 aaKnown RBP eCLIP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 POU4F1Q01851 419 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 CACNB2Q08289 660 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 CAPRIN1Q14444 709 aaKnown RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 KCTD19Q17RG1 926 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 C6orf141Q5SZD1 244 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 AGAP6Q5VW22 663 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 MPZL3Q6UWV2 235 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 PLEKHG7Q6ZR37 379 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 SPATC1Q76KD6 591 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 REM2Q8IYK8 340 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 SLC15A4Q8N697 577 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 OR6B3Q8NGW1 331 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 HCAR2Q8TDS4 363 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 OSCP1Q8WVF1 389 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 RXFP2Q8WXD0 754 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 AGAP4Q96P64 663 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 TARS2Q9BW92 718 aaKnown RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 IFT80Q9P2H3 777 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 FBXO40Q9UH90 709 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 TANC1Q9C0D5 1861 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 FARP2O94887 1054 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 ZBTB11O95625 1053 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 NCF1P14598 390 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 TGFBR2P37173 567 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 MATKP42679 507 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 RAP1GAPP47736 663 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 GRIA4P48058 902 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 TUBA1BP68363 451 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 MRPS22P82650 360 aaKnown RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 MFSD10Q14728 455 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 ABRAXAS1Q6UWZ7 409 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 TUBA1AQ71U36 451 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 SIX6OS1Q8N1H7 587 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 DDHD1Q8NEL9 900 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 OTUD5Q96G74 571 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 FCRL1Q96LA6 429 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 CEP19Q96LK0 163 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 ARHGEF38Q9NXL2 777 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 BAG5Q9UL15 447 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 PCDHGA3Q9Y5H0 932 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 MBLAC1A4D2B0 266 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 PIRO00625 290 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 TPP1O14773 563 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 TRIM3O75382 744 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 SEC22BO75396 215 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 ALX3O95076 343 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 ALDOCP09972 364 aaKnown RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 CXCR2P25025 360 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 EEF1DP29692 281 aaKnown RBP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 CSTF2P33240 577 aaKnown RBP eCLIP5.34□□□□□ -1.55
SYNE1-220ENST00000471834 MASP1P48740 699 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 ITGA1P56199 1179 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 PRKCEQ02156 737 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 TYSND1Q2T9J0 566 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 PARP15Q460N3 678 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 GLRA4Q5JXX5 417 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 GDPGP1Q6ZNW5 385 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 ARHGAP12Q8IWW6 846 aa5.34□□□□□ -1.55
SYNE1-220ENST00000471834 ZNF683Q8IZ20 524 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms