RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 ZNF592Q92610 1267 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 AGAP2Q99490 1192 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 ELF4Q99607 663 aaPredicted RBP11.91□□□□□ -0.5
VPS13D-204ENST00000469054 RIOK2Q9BVS4 552 aaKnown RBP11.91□□□□□ -0.5
VPS13D-204ENST00000469054 WDR26Q9H7D7 661 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 IL21RQ9HBE5 538 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 BPIFA1Q9NP55 256 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 TMEM9BQ9NQ34 198 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 DNAAF2Q9NVR5 837 aaKnown RBP11.91□□□□□ -0.5
VPS13D-204ENST00000469054 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.91□□□□□ -0.5
VPS13D-204ENST00000469054 IL17CQ9P0M4 197 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 CDC23Q9UJX2 597 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 ARL5AQ9Y689 179 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 TNRC6BQ9UPQ9 1833 aaKnown RBP11.9□□□□□ -0.5
VPS13D-204ENST00000469054 A0A1B0GTQ1 180 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 C4orf47A7E2U8 309 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 CACNB4O00305 520 aaPredicted RBP11.9□□□□□ -0.5
VPS13D-204ENST00000469054 STX7O15400 261 aaKnown RBP11.9□□□□□ -0.5
VPS13D-204ENST00000469054 CRTAMO95727 393 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 SOD1P00441 154 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 BPIP17213 487 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 TPSB2P20231 275 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 LPOP22079 712 aaPredicted RBP11.9□□□□□ -0.5
VPS13D-204ENST00000469054 HTR1BP28222 390 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 PTGIRP43119 386 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 RXRGP48443 463 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 LIMK1P53667 647 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 DCDC1P59894 354 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 CDK3Q00526 305 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 CDK16Q00536 496 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 PDE1BQ01064 536 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 FZD2Q14332 565 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 NFATC4Q14934 902 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 TPSAB1Q15661 275 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 STPG1Q5TH74 334 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 ZDHHC20Q5W0Z9 365 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 ALS2CLQ60I27 953 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 MACC1Q6ZN28 852 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 PARGQ86W56 976 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 HEATR4Q86WZ0 1026 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 NETO1Q8TDF5 533 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 FUBP1Q96AE4 644 aaKnown RBP11.9□□□□□ -0.5
VPS13D-204ENST00000469054 LGR4Q9BXB1 951 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 TEX101Q9BY14 249 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 CASS4Q9NQ75 786 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 PHPT1Q9NRX4 125 aaPredicted RBP11.9□□□□□ -0.5
VPS13D-204ENST00000469054 PIH1D1Q9NWS0 290 aaKnown RBP11.9□□□□□ -0.5
VPS13D-204ENST00000469054 NFKBIL1Q9UBC1 381 aaPredicted RBP11.9□□□□□ -0.5
VPS13D-204ENST00000469054 FNDC3AQ9Y2H6 1198 aaKnown RBP11.9□□□□□ -0.5
VPS13D-204ENST00000469054 PKP3Q9Y446 797 aa11.9□□□□□ -0.5
VPS13D-204ENST00000469054 FAM186AA6NE01 2351 aa11.9□□□□□ -0.51
VPS13D-204ENST00000469054 ANKRD36A6QL64 1941 aa11.9□□□□□ -0.51
VPS13D-204ENST00000469054 CEP192Q8TEP8 1941 aa11.9□□□□□ -0.51
VPS13D-204ENST00000469054 TCRBV7S3A2A0A539 114 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 AP3B1O00203 1094 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 YKT6O15498 198 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 LDB2O43679 373 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 BUD23O43709 281 aaKnown RBP11.89□□□□□ -0.51
VPS13D-204ENST00000469054 PPFIA2O75334 1257 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 ZNF883P0CG24 379 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 MYCLP1P12525 358 aaPredicted RBP11.89□□□□□ -0.51
VPS13D-204ENST00000469054 SPAM1P38567 509 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 ADCY8P40145 1251 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 MAGEA6P43360 314 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 ARRB1P49407 418 aaPredicted RBP11.89□□□□□ -0.51
VPS13D-204ENST00000469054 CCT8P50990 548 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 TERF1P54274 439 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 KIAA1024LP59773 190 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 DR1Q01658 176 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 CKAP4Q07065 602 aaKnown RBP11.89□□□□□ -0.51
VPS13D-204ENST00000469054 EIF2B5Q13144 721 aaKnown RBP11.89□□□□□ -0.51
VPS13D-204ENST00000469054 PTK6Q13882 451 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 DHX34Q14147 1143 aaKnown RBP11.89□□□□□ -0.51
VPS13D-204ENST00000469054 KCNJ11Q14654 390 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 PTPRCAPQ14761 206 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 POU6F1Q14863 301 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 ENPP7Q6UWV6 458 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 ADAMTSL4Q6UY14 1074 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 SYDE1Q6ZW31 735 aaPredicted RBP11.89□□□□□ -0.51
VPS13D-204ENST00000469054 ZNF572Q7Z3I7 529 aaPredicted RBP11.89□□□□□ -0.51
VPS13D-204ENST00000469054 TRAM1L1Q8N609 369 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 KIF18AQ8NI77 898 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 DTX3LQ8TDB6 740 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 CPT1BQ92523 772 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 WDR92Q96MX6 357 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 PLEKHG4BQ96PX9 1271 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 KRT12Q99456 494 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 C19orf43Q9BQ61 176 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 ZSCAN5AQ9BUG6 496 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 SPATA16Q9BXB7 569 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 IL26Q9NPH9 171 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 TM7SF3Q9NS93 570 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 KCTD3Q9Y597 815 aa11.89□□□□□ -0.51
VPS13D-204ENST00000469054 TMEM202A6NGA9 273 aa11.88□□□□□ -0.51
VPS13D-204ENST00000469054 FADS2P1A8MWK0 482 aa11.88□□□□□ -0.51
VPS13D-204ENST00000469054 PCDHGA12O60330 932 aa11.88□□□□□ -0.51
VPS13D-204ENST00000469054 CSF2P04141 144 aa11.88□□□□□ -0.51
VPS13D-204ENST00000469054 NME1P15531 152 aaKnown RBP11.88□□□□□ -0.51
VPS13D-204ENST00000469054 KELP23276 732 aa11.88□□□□□ -0.51
VPS13D-204ENST00000469054 ZNF140P52738 457 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms