RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 E2F3O00716 465 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 FCHO1O14526 889 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 IFIT3O14879 490 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 YKT6O15498 198 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 VEGFDO43915 354 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 GPRIN2O60269 458 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 CIDEAO60543 219 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 C22orf31O95567 290 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 FGBP02675 491 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 ALPPP05187 535 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 PRKCBP05771 671 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 FGF4P08620 206 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 VIMP08670 466 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 MYBL1P10243 752 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 ALPPL2P10696 532 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 KITP10721 976 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 EPB41P11171 864 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 MYL4P12829 197 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 KRT5P13647 590 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 GLRA2P23416 452 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 ALDH4A1P30038 563 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 HNF1BP35680 557 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 LONP1P36776 959 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 PPARGP37231 505 aaPredicted RBP4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 CAPZA2P47755 286 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 ASIC1P78348 528 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 RNASELQ05823 741 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 NPRL3Q12980 569 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 PLD1Q13393 1074 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 GPM6BQ13491 265 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 MTX1Q13505 466 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 BYSLQ13895 437 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 DHX34Q14147 1143 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 GIT2Q14161 759 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 SEC23BQ15437 767 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 GPR68Q15743 365 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 GPR162Q16538 588 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 FAM187BQ17R55 369 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 PRICKLE4Q2TBC4 344 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 NHSL2Q5HYW2 709 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 RUSC1-AS1Q66K80 236 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 KRT80Q6KB66 452 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 C8orf74Q6P047 294 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 AAGABQ6PD74 315 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 ZNF600Q6ZNG1 722 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 IRF2BP2Q7Z5L9 587 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 ANKS1BQ7Z6G8 1248 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 PSTKQ8IV42 348 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 DENND6AQ8IWF6 608 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 SCYL3Q8IZE3 742 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 SYCP3Q8IZU3 236 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 DNAJC5GQ8N7S2 189 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 KCNH5Q8NCM2 988 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 BCAS4Q8TDM0 211 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 SLC13A3Q8WWT9 602 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 RAPGEF4Q8WZA2 1011 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 NCSTNQ92542 709 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 IQCDQ96DY2 449 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 SUCLG2Q96I99 432 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 ART5Q96L15 291 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 ABHD1Q96SE0 405 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 CCDC77Q9BR77 488 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 MOV10L1Q9BXT6 1211 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 CARD9Q9H257 536 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 HAUS4Q9H6D7 363 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 PRDM8Q9NQV8 689 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 FAM114A2Q9NRY5 505 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 SOHLH2Q9NX45 425 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 CWC15Q9P013 229 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 COL20A1Q9P218 1284 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 CPNE7Q9UBL6 633 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 LPAR3Q9UBY5 353 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 SUFUQ9UMX1 484 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 DLGAP4Q9Y2H0 992 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 CACNA1IQ9P0X4 2223 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 TCRBV5S1A1TA0A578 114 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 OR6C74A6NCV1 312 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 MYMKA6NI61 221 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 TMEM232C9JQI7 657 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 E7EVH7 732 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 E9PBE3 544 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 STX16-NPEPL1H3BU86 382 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 CES2O00748 559 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 INSIG1O15503 277 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 HNRNPRO43390 633 aaKnown RBP4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 TSPAN1O60635 241 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 ACTL6BO94805 426 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 PRAMEF12O95522 483 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 NDST3O95803 873 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 CHRNA1P02708 482 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 GALTP07902 379 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 ABCB1P08183 1280 aaPredicted RBP4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 CYP3A4P08684 503 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 CYP2C9P11712 490 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 KCNA3P22001 575 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 PRKACBP22694 351 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 EPHA8P29322 1005 aaPredicted RBP4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 RFC2P35250 354 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 CLCN4P51793 760 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 DGKEP52429 567 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms