RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PGBD5Q8N414 524 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 ZSCAN1Q8NBB4 408 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 ACTL9Q8TC94 416 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 TFB1MQ8WVM0 346 aaKnown RBP11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 ASB12Q8WXK4 309 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 KLK6Q92876 244 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 TUBGCP5Q96RT8 1024 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 NT5MQ9NPB1 228 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 HAUS2Q9NVX0 235 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 PLEKHB1Q9UF11 243 aaPredicted RBP11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 AMACRQ9UHK6 382 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 ACSL6Q9UKU0 697 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 JRKLQ9Y4A0 524 aa11.95□□□□□ -0.5
SQSTM1-206ENST00000466342 EME2A4GXA9 379 aaPredicted RBP11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 C16orf96A6NNT2 1141 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 HACD1B0YJ81 288 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 KCNK1O00180 336 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 INSIG1O15503 277 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 MTSS1O43312 755 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 NEBLO76041 1014 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 PAK4O96013 591 aaPredicted RBP11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 HLA-DQB2P05538 268 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 UGT2B4P06133 528 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 PRLRP16471 622 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 SCNN1BP51168 640 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 RIPPLY3P57055 190 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 MAXP61244 160 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 ZBTB17Q13105 803 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 XRCC4Q13426 336 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 CDKN3Q16667 212 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 RALGPS1Q5JS13 557 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 SEL1L3Q68CR1 1132 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 ALG1LQ6GMV1 187 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 GDPD4Q6W3E5 623 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 PARS2Q7L3T8 475 aaKnown RBP11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 EFL1Q7Z2Z2 1120 aaKnown RBP11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 ABI3BPQ7Z7G0 1075 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 SLC35F6Q8N357 371 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 TTC13Q8NBP0 860 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 IFT43Q96FT9 208 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 KLHL32Q96NJ5 620 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 LENG8Q96PV6 779 aaPredicted RBP11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 NUDCD1Q96RS6 583 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 IL12RB2Q99665 862 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 C1QTNF2Q9BXJ5 285 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 POLR1EQ9GZS1 481 aaKnown RBP11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 CAAP1Q9H8G2 361 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 KCND1Q9NSA2 647 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 RBM22Q9NW64 420 aaKnown RBP eCLIP11.94□□□□□ -0.54e-10■■■■■ 53.8
SQSTM1-206ENST00000466342 NCKIPSDQ9NZQ3 722 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 SEPT10Q9P0V9 454 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 ANAPC2Q9UJX6 822 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 CA5BQ9Y2D0 317 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 PCDHGA4Q9Y5G9 962 aa11.94□□□□□ -0.5
SQSTM1-206ENST00000466342 TRPM6Q9BX84 2022 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 A6NNZ2 444 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 PIGNO95427 931 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 LIPCP11150 499 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 SERPINA4P29622 427 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 SUOXP51687 545 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 EIF3EP60228 445 aaKnown RBP11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 HNRNPKP61978 463 aaKnown RBP eCLIP11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 SGCGQ13326 291 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 MANEAQ5SRI9 462 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 GUSBP11Q6P575 273 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 B4GALNT4Q76KP1 1039 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 TTC7BQ86TV6 843 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 SLC13A5Q86YT5 568 aaPredicted RBP11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 OR13H1Q8NG92 308 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 WDR48Q8TAF3 677 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 HCAR2Q8TDS4 363 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 BMFQ96LC9 184 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 ZNF641Q96N77 438 aaPredicted RBP11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 QKIQ96PU8 341 aaKnown RBP eCLIP11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 MYOCQ99972 504 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 SUV39H2Q9H5I1 410 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 ATP13A3Q9H7F0 1226 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 FZD3Q9NPG1 666 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 DKK3Q9UBP4 350 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 ATP8A1Q9Y2Q0 1164 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 ABCA12Q86UK0 2595 aa11.93□□□□□ -0.5
SQSTM1-206ENST00000466342 CRYBG3Q68DQ2 2970 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 FBN2P35556 2912 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 TCRBV7S2A1N4TA0A589 114 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 TSPAN11A1L157 253 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 H7C0C1 242 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 NEMP1O14524 444 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 PLD2O14939 933 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 AREL1O15033 823 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 JCHAINP01591 159 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 RBP3P10745 1247 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 PTPN3P26045 913 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 CXCR5P32302 372 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 ABL2P42684 1182 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 ATP5OP48047 213 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 CLDN2P57739 230 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 CYP4F2P78329 520 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 DSC2Q02487 901 aa11.92□□□□□ -0.5
SQSTM1-206ENST00000466342 BCL2L1Q07817 233 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms