RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 ZNF648Q5T619 568 aaPredicted RBP11.62□□□□□ -0.55
CUX1-207ENST00000465461 KCTD11Q693B1 232 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 DENND5AQ6IQ26 1287 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 DOK6Q6PKX4 331 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 RANBP10Q6VN20 620 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 MACC1Q6ZN28 852 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 DBX2Q6ZNG2 339 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 KANSL1Q7Z3B3 1105 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 DGLUCYQ7Z3D6 616 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 GLT6D1Q7Z4J2 308 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 PARGQ86W56 976 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 DCP2Q8IU60 420 aaKnown RBP11.62□□□□□ -0.55
CUX1-207ENST00000465461 HID1Q8IV36 788 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 PHACTR4Q8IZ21 702 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 TTC30BQ8N4P2 665 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 CCDC89Q8N998 374 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 LMX1AQ8TE12 382 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 OR1E3Q8WZA6 343 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 MAGOHBQ96A72 148 aaKnown RBP11.62□□□□□ -0.55
CUX1-207ENST00000465461 PDXPQ96GD0 296 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 NAPGQ99747 312 aaPredicted RBP11.62□□□□□ -0.55
CUX1-207ENST00000465461 FAM83DQ9H4H8 585 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 WDR26Q9H7D7 661 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 ARFGAP3Q9NP61 516 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 PKD2L2Q9NZM6 624 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 PCOLCE2Q9UKZ9 415 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 DRG1Q9Y295 367 aaKnown RBP11.62□□□□□ -0.55
CUX1-207ENST00000465461 TMEM98Q9Y2Y6 226 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 ARL5AQ9Y689 179 aa11.62□□□□□ -0.55
CUX1-207ENST00000465461 LAMA1P25391 3075 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 WDR87Q6ZQQ6 2873 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 PGRMC1O00264 195 aaKnown RBP11.61□□□□□ -0.55
CUX1-207ENST00000465461 CACNB4O00305 520 aaPredicted RBP11.61□□□□□ -0.55
CUX1-207ENST00000465461 PCDHGA12O60330 932 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 DFNA5O60443 496 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 FUCA1P04066 466 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 FGF1P05230 155 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 TSHRP16473 764 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 HTR1BP28222 390 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 CA5AP35218 305 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 VPS41P49754 854 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 SRP54P61011 504 aaKnown RBP11.61□□□□□ -0.55
CUX1-207ENST00000465461 TMPRSS15P98073 1019 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 PPARDQ03181 441 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 DPTQ07507 201 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 MSLNQ13421 630 aaPredicted RBP11.61□□□□□ -0.55
CUX1-207ENST00000465461 SUZ12Q15022 739 aaKnown RBP11.61□□□□□ -0.55
CUX1-207ENST00000465461 PAPD7Q5XG87 772 aaKnown RBP11.61□□□□□ -0.55
CUX1-207ENST00000465461 DRICH1Q6PGQ1 229 aaPredicted RBP11.61□□□□□ -0.55
CUX1-207ENST00000465461 KLHDC8BQ8IXV7 354 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 NRSN1Q8IZ57 195 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 OXR1Q8N573 874 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 OR56A4Q8NGH8 313 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 OR52K1Q8NGK4 314 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 ACTRT1Q8TDG2 376 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 WDR92Q96MX6 357 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 TEX101Q9BY14 249 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 FGF22Q9HCT0 170 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 RAB6BQ9NRW1 208 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 KLQ9UEF7 1012 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 CNOT6Q9ULM6 557 aaKnown RBP11.61□□□□□ -0.55
CUX1-207ENST00000465461 TTC7AQ9ULT0 858 aaPredicted RBP11.61□□□□□ -0.55
CUX1-207ENST00000465461 ZKSCAN5Q9Y2L8 839 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 PCDHGB2Q9Y5G2 931 aa11.61□□□□□ -0.55
CUX1-207ENST00000465461 CEP250Q9BV73 2442 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 CCDC78A2IDD5 438 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 CCL22O00626 93 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 TRIM38O00635 465 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 FLRT2O43155 660 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 GPR39O43194 453 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 CBFA2T3O75081 653 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 ZNF189O75820 626 aaPredicted RBP11.6□□□□□ -0.55
CUX1-207ENST00000465461 RASGRP1O95267 797 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 AP2A1O95782 977 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 GIMD1P0DJR0 217 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 MYCLP1P12525 358 aaPredicted RBP11.6□□□□□ -0.55
CUX1-207ENST00000465461 NME1P15531 152 aaKnown RBP11.6□□□□□ -0.55
CUX1-207ENST00000465461 ACTN2P35609 894 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 COILP38432 576 aaPredicted RBP11.6□□□□□ -0.55
CUX1-207ENST00000465461 LMAN1P49257 510 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 KIAA1024LP59773 190 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 DEFB133Q30KQ1 61 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 PRRT3Q5FWE3 981 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 HENMT1Q5T8I9 393 aaKnown RBP11.6□□□□□ -0.55
CUX1-207ENST00000465461 MARK2Q7KZI7 788 aaKnown RBP11.6□□□□□ -0.55
CUX1-207ENST00000465461 ZNF765Q7L2R6 523 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 ZNF548Q8NEK5 533 aaPredicted RBP11.6□□□□□ -0.55
CUX1-207ENST00000465461 CCL4L1Q8NHW4 92 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 LRRC61Q9BV99 259 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 SPATA16Q9BXB7 569 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 CLPBQ9H078 707 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 SLC32A1Q9H598 525 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 CYP4F12Q9HCS2 524 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 PHPT1Q9NRX4 125 aaPredicted RBP11.6□□□□□ -0.55
CUX1-207ENST00000465461 KCND1Q9NSA2 647 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.6□□□□□ -0.55
CUX1-207ENST00000465461 PAK5Q9P286 719 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 APOBEC3BQ9UH17 382 aaKnown RBP11.6□□□□□ -0.55
CUX1-207ENST00000465461 PLEKHM1Q9Y4G2 1056 aa11.6□□□□□ -0.55
CUX1-207ENST00000465461 PCYT1BQ9Y5K3 369 aaPredicted RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms