RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 TEX44Q53QW1 395 aa21.14■□□□□ 0.97
HMGB3-205ENST00000455596 FAM182AQ5T1J6 154 aa21.14■□□□□ 0.97
HMGB3-205ENST00000455596 GAS2L3Q86XJ1 694 aa21.14■□□□□ 0.97
HMGB3-205ENST00000455596 CCDC50Q8IVM0 306 aa21.14■□□□□ 0.97
HMGB3-205ENST00000455596 KIAA1524Q8TCG1 905 aa21.14■□□□□ 0.97
HMGB3-205ENST00000455596 CCHCR1Q8TD31 782 aa21.14■□□□□ 0.97
HMGB3-205ENST00000455596 GPBAR1Q8TDU6 330 aa21.14■□□□□ 0.97
HMGB3-205ENST00000455596 TFB1MQ8WVM0 346 aaKnown RBP21.14■□□□□ 0.97
HMGB3-205ENST00000455596 P3H4Q92791 437 aa21.14■□□□□ 0.97
HMGB3-205ENST00000455596 RBM41Q96IZ5 413 aaKnown RBP21.14■□□□□ 0.97
HMGB3-205ENST00000455596 CALR3Q96L12 384 aaKnown RBP21.14■□□□□ 0.97
HMGB3-205ENST00000455596 GSDMCQ9BYG8 508 aa21.14■□□□□ 0.97
HMGB3-205ENST00000455596 SLC25A51Q9H1U9 297 aa21.14■□□□□ 0.97
HMGB3-205ENST00000455596 SYNDIG1Q9H7V2 258 aa21.14■□□□□ 0.97
HMGB3-205ENST00000455596 TRNAU1APQ9NX07 287 aaKnown RBP21.14■□□□□ 0.97
HMGB3-205ENST00000455596 PKD2L2Q9NZM6 624 aa21.14■□□□□ 0.97
HMGB3-205ENST00000455596 SAE1Q9UBE0 346 aaPredicted RBP21.14■□□□□ 0.97
HMGB3-205ENST00000455596 LHX6Q9UPM6 363 aa21.14■□□□□ 0.97
HMGB3-205ENST00000455596 SLC17A4Q9Y2C5 497 aa21.14■□□□□ 0.97
HMGB3-205ENST00000455596 URB1O60287 2271 aaKnown RBP21.14■□□□□ 0.97
HMGB3-205ENST00000455596 KIF26BQ2KJY2 2108 aa21.14■□□□□ 0.97
HMGB3-205ENST00000455596 hCG_1818297A0A087WSY0 165 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 A0A087WV48 116 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 B4DGG1 531 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 NOBOXO60393 691 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 FUCA1P04066 466 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 IVLP07476 585 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 PECAM1P16284 738 aaPredicted RBP21.13■□□□□ 0.97
HMGB3-205ENST00000455596 GABREP78334 506 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 ILF3Q12906 894 aaKnown RBP eCLIP21.13■□□□□ 0.97
HMGB3-205ENST00000455596 SLC14A2Q15849 920 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 DOK6Q6PKX4 331 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 C19orf48Q6RUI8 117 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 EXD1Q8NHP7 514 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 HNRNPLLQ8WVV9 542 aaKnown RBP21.13■□□□□ 0.97
HMGB3-205ENST00000455596 HIC2Q96JB3 615 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 DCBLD2Q96PD2 775 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 RIOK2Q9BVS4 552 aaKnown RBP21.13■□□□□ 0.97
HMGB3-205ENST00000455596 GLOD4Q9HC38 313 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 RABGEF1Q9UJ41 708 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 ENTPD2Q9Y5L3 495 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 APC2O95996 2303 aa21.13■□□□□ 0.97
HMGB3-205ENST00000455596 DMXL2Q8TDJ6 3036 aa21.12■□□□□ 0.97
HMGB3-205ENST00000455596 NTN3O00634 580 aaPredicted RBP21.12■□□□□ 0.97
HMGB3-205ENST00000455596 TLX3O43711 291 aaPredicted RBP21.12■□□□□ 0.97
HMGB3-205ENST00000455596 MPOP05164 745 aa21.12■□□□□ 0.97
HMGB3-205ENST00000455596 GLB1P16278 677 aa21.12■□□□□ 0.97
HMGB3-205ENST00000455596 PTPN3P26045 913 aa21.12■□□□□ 0.97
HMGB3-205ENST00000455596 POLD2P49005 469 aa21.12■□□□□ 0.97
HMGB3-205ENST00000455596 MARCKSL1P49006 195 aa21.12■□□□□ 0.97
HMGB3-205ENST00000455596 SPINT3P49223 89 aa21.12■□□□□ 0.97
HMGB3-205ENST00000455596 PCSK7Q16549 785 aa21.12■□□□□ 0.97
HMGB3-205ENST00000455596 C14orf28Q4W4Y0 310 aa21.12■□□□□ 0.97
HMGB3-205ENST00000455596 KDELC2Q7Z4H8 507 aa21.12■□□□□ 0.97
HMGB3-205ENST00000455596 LSMEM2Q8N112 164 aa21.12■□□□□ 0.97
HMGB3-205ENST00000455596 PTCD2Q8WV60 388 aaKnown RBP21.12■□□□□ 0.97
HMGB3-205ENST00000455596 TRIB3Q96RU7 358 aa21.12■□□□□ 0.97
HMGB3-205ENST00000455596 AGAP2Q99490 1192 aa21.12■□□□□ 0.97
HMGB3-205ENST00000455596 POLR1BQ9H9Y6 1135 aa21.12■□□□□ 0.97
HMGB3-205ENST00000455596 UNC13CQ8NB66 2214 aa21.12■□□□□ 0.97
HMGB3-205ENST00000455596 RCCD1A6NED2 376 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 INPP4BO15327 924 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 MTSS1O43312 755 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 EIF2S3P41091 472 aaKnown RBP21.11■□□□□ 0.97
HMGB3-205ENST00000455596 LSSP48449 732 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 NAP1L1P55209 391 aaKnown RBP21.11■□□□□ 0.97
HMGB3-205ENST00000455596 CDK18Q07002 472 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 ADCY2Q08462 1091 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 PEX6Q13608 980 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 HLTFQ14527 1009 aaKnown RBP eCLIP21.11■□□□□ 0.97
HMGB3-205ENST00000455596 COL28A1Q2UY09 1125 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 TBC1D25Q3MII6 688 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 CERCAMQ5T4B2 595 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 RAD9BQ6WBX8 426 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 LYSMD3Q7Z3D4 306 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 TRIM74Q86UV6 250 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 NRROSQ86YC3 692 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 SPATA22Q8NHS9 363 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 SNIP1Q8TAD8 396 aaKnown RBP21.11■□□□□ 0.97
HMGB3-205ENST00000455596 KRT35Q92764 455 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 FGF11Q92914 225 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 TADA1Q96BN2 335 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 SCARF2Q96GP6 870 aaPredicted RBP21.11■□□□□ 0.97
HMGB3-205ENST00000455596 ATXN7L3BQ96GX2 97 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 COX14Q96I36 57 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 TEKT5Q96M29 485 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 GFM1Q96RP9 751 aaKnown RBP21.11■□□□□ 0.97
HMGB3-205ENST00000455596 CDH19Q9H159 772 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 FAM83DQ9H4H8 585 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 ZFYVE1Q9HBF4 777 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 TMEM98Q9Y2Y6 226 aa21.11■□□□□ 0.97
HMGB3-205ENST00000455596 RGSL1A5PLK6 1076 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 BTNL10A8MVZ5 291 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 CASC3O15234 703 aaKnown RBP21.1■□□□□ 0.97
HMGB3-205ENST00000455596 MT-CYBP00156 380 aaPredicted RBP21.1■□□□□ 0.97
HMGB3-205ENST00000455596 RPLP0P05388 317 aaKnown RBP21.1■□□□□ 0.97
HMGB3-205ENST00000455596 PNLIPP16233 465 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 AK4P27144 223 aaPredicted RBP21.1■□□□□ 0.97
HMGB3-205ENST00000455596 CTNNA1P35221 906 aaKnown RBP21.1■□□□□ 0.97
HMGB3-205ENST00000455596 ADCY8P40145 1251 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms