RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 IQCF5A8MTL0 148 aa13.63□□□□□ -0.23
CLK3-203ENST00000454830 BTN3A1O00481 513 aa13.63□□□□□ -0.23
CLK3-203ENST00000454830 PRAMEF12O95522 483 aa13.63□□□□□ -0.23
CLK3-203ENST00000454830 ZNF140P52738 457 aaPredicted RBP13.63□□□□□ -0.23
CLK3-203ENST00000454830 RIPK1Q13546 671 aa13.63□□□□□ -0.23
CLK3-203ENST00000454830 CLEC6AQ6EIG7 209 aa13.63□□□□□ -0.23
CLK3-203ENST00000454830 PTRHD1Q6GMV3 140 aaKnown RBP13.63□□□□□ -0.23
CLK3-203ENST00000454830 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.63□□□□□ -0.23
CLK3-203ENST00000454830 MYLIPQ8WY64 445 aa13.63□□□□□ -0.23
CLK3-203ENST00000454830 PRM3Q9NNZ6 103 aa13.63□□□□□ -0.23
CLK3-203ENST00000454830 TLR9Q9NR96 1032 aa13.63□□□□□ -0.23
CLK3-203ENST00000454830 MATN2O00339 956 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 CD160O95971 181 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 IGSF6O95976 241 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 TPBGLP0DKB5 382 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 OGNP20774 298 aaKnown RBP13.62□□□□□ -0.23
CLK3-203ENST00000454830 CTSOP43234 321 aaPredicted RBP13.62□□□□□ -0.23
CLK3-203ENST00000454830 DNAL1Q4LDG9 190 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 SCUBE1Q8IWY4 988 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 AARSD1Q9BTE6 412 aaKnown RBP13.62□□□□□ -0.23
CLK3-203ENST00000454830 ZDHHC6Q9H6R6 413 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 SYTL2Q9HCH5 934 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 ZNF711Q9Y462 761 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 TANC1Q9C0D5 1861 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 CARNS1A5YM72 827 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 LRRC14BA6NHZ5 514 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 CAPN14A8MX76 684 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 NRG2O14511 850 aaPredicted RBP13.62□□□□□ -0.23
CLK3-203ENST00000454830 PDE5AO76074 875 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 BMP1P13497 986 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 KCNC1P48547 511 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 PLEKHG6Q3KR16 790 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 ARHGAP15Q53QZ3 475 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 SPRED2Q7Z698 418 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 CUZD1Q86UP6 607 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 SLC22A9Q8IVM8 553 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 SIDT2Q8NBJ9 832 aaKnown RBP13.62□□□□□ -0.23
CLK3-203ENST00000454830 GRIN3AQ8TCU5 1115 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 PTERQ96BW5 349 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 RETREG1Q9H6L5 497 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 CERS4Q9HA82 394 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 NOP53Q9NZM5 478 aaKnown RBP13.62□□□□□ -0.23
CLK3-203ENST00000454830 COL4A4P53420 1690 aaPredicted RBP13.62□□□□□ -0.23
CLK3-203ENST00000454830 BAG2O95816 211 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 CCR2P41597 374 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 KLF10Q13118 480 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 INO80DQ53TQ3 878 aaPredicted RBP13.62□□□□□ -0.23
CLK3-203ENST00000454830 RALGPS1Q5JS13 557 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 SNX32Q86XE0 403 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 TMEM25Q86YD3 366 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 DDIASQ8IXT1 998 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 ESAMQ96AP7 390 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 ASB8Q9H765 288 aa13.62□□□□□ -0.23
CLK3-203ENST00000454830 TRAFD1O14545 582 aaPredicted RBP13.61□□□□□ -0.23
CLK3-203ENST00000454830 TRIM16O95361 564 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 ANP32DO95626 131 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 PKMP14618 531 aaKnown RBP13.61□□□□□ -0.23
CLK3-203ENST00000454830 ZNF37AP17032 561 aaPredicted RBP13.61□□□□□ -0.23
CLK3-203ENST00000454830 TTPAP49638 278 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 NUDT2P50583 147 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 TUBB3Q13509 450 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 TSNQ15631 228 aaKnown RBP13.61□□□□□ -0.23
CLK3-203ENST00000454830 ISCA2Q86U28 154 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 DEFB107AQ8IZN7 70 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 LSMEM2Q8N112 164 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 SNX31Q8N9S9 440 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 LENG8Q96PV6 779 aaPredicted RBP13.61□□□□□ -0.23
CLK3-203ENST00000454830 C17orf80Q9BSJ5 609 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 ZFYVE1Q9HBF4 777 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 HECAQ9UBI9 543 aaPredicted RBP13.61□□□□□ -0.23
CLK3-203ENST00000454830 CRLS1Q9UJA2 301 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 PLA2G4CQ9UP65 541 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 SORCS3Q9UPU3 1222 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 NPEPPSL1A6NEC2 478 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 SNX2O60749 519 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 TNK2Q07912 1038 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 RCN1Q15293 331 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 USP13Q92995 863 aaPredicted RBP13.61□□□□□ -0.23
CLK3-203ENST00000454830 ATP13A3Q9H7F0 1226 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 MID1IP1Q9NPA3 183 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 HACD3Q9P035 362 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 NKX1-2Q9UD57 310 aaPredicted RBP13.61□□□□□ -0.23
CLK3-203ENST00000454830 VTI1BQ9UEU0 232 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 TARM1B6A8C7 271 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 ZNF195O14628 629 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 GIPC1O14908 333 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 CLDN7O95471 211 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 COX4I1P13073 169 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 UGT1A6P19224 532 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 UGT1A1P22309 533 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 UGT1A4P22310 534 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 FDXRP22570 491 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 UGT1A3P35503 534 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 UGT1A5P35504 534 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 RECQLP46063 649 aaPredicted RBP13.61□□□□□ -0.23
CLK3-203ENST00000454830 AP1S1P61966 158 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 PFKPQ01813 784 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 POM121L1PQ3SYA9 428 aa13.61□□□□□ -0.23
CLK3-203ENST00000454830 KHDC1Q4VXA5 237 aaKnown RBP13.61□□□□□ -0.23
CLK3-203ENST00000454830 ALG1LQ6GMV1 187 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms