RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 E7ENX8 843 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 CCNT2O60583 730 aaKnown RBP11.95□□□□□ -0.5
SMPD4-213ENST00000454468 RPP40O75818 363 aaKnown RBP11.95□□□□□ -0.5
SMPD4-213ENST00000454468 ZNF189O75820 626 aaPredicted RBP11.95□□□□□ -0.5
SMPD4-213ENST00000454468 MZF1P28698 734 aaPredicted RBP11.95□□□□□ -0.5
SMPD4-213ENST00000454468 CPOXP36551 454 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 CYP4F8P98187 520 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 PLOD1Q02809 727 aaPredicted RBP11.95□□□□□ -0.5
SMPD4-213ENST00000454468 USP41Q3LFD5 358 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 STXBP5Q5T5C0 1151 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 ANKS6Q68DC2 871 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 SLC22A9Q8IVM8 553 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 FNDC5Q8NAU1 212 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 CCDC126Q96EE4 140 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 C8orf48Q96LL4 319 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 PPP1R2P1Q96PQ5 205 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 SDK1Q7Z5N4 2213 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 COCHO43405 550 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 CLASP2O75122 1294 aaKnown RBP11.95□□□□□ -0.5
SMPD4-213ENST00000454468 SMNDC1O75940 238 aaKnown RBP eCLIP11.95□□□□□ -0.5
SMPD4-213ENST00000454468 NDST3O95803 873 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 S1PR4O95977 384 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 FGF1P05230 155 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 TUFMP49411 452 aaKnown RBP11.95□□□□□ -0.5
SMPD4-213ENST00000454468 SGSHP51688 502 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 MS4A2Q01362 244 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 GPR17Q13304 367 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 PARP15Q460N3 678 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 C6orf52Q5T4I8 152 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 FAM45BPQ6NSW5 357 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 IRGCQ6NXR0 463 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 KDELC1Q6UW63 502 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 MILR1Q7Z6M3 343 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 LSMEM2Q8N112 164 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 UMODL1-AS1Q8N2C9 162 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 KDM1BQ8NB78 822 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 KLHL23Q8NBE8 558 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 RDH11Q8TC12 318 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 FAM45AQ8TCE6 357 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 ACTRT2Q8TDY3 377 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 PTERQ96BW5 349 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 NMD3Q96D46 503 aaKnown RBP11.95□□□□□ -0.5
SMPD4-213ENST00000454468 C19orf60Q96EN9 201 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 CAAP1Q9H8G2 361 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 TMEM248Q9NWD8 314 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 GALPQ9UBC7 116 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 CROTQ9UKG9 612 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 HTTP42858 3142 aa11.95□□□□□ -0.5
SMPD4-213ENST00000454468 ARVCFO00192 962 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 SDHDO14521 159 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 SYN3O14994 580 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 TIPRLO75663 272 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 SNRPB2P08579 225 aaKnown RBP11.94□□□□□ -0.5
SMPD4-213ENST00000454468 SBK3P0C264 359 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 HMOX2P30519 316 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 FOXA1P55317 472 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 CEACAM7Q14002 265 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 TMEM259Q4ZIN3 620 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 NADSYN1Q6IA69 706 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 SETD3Q86TU7 594 aaPredicted RBP11.94□□□□□ -0.5
SMPD4-213ENST00000454468 ARL10Q8N8L6 244 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 CNDP1Q96KN2 507 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 Q9H521 79 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 CREBZFQ9NS37 354 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 ZNF638Q14966 1978 aaKnown RBP11.94□□□□□ -0.5
SMPD4-213ENST00000454468 C1orf232A0A0U1RR37 186 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 AZIN1O14977 448 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 INSIG1O15503 277 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 SLC7A4O43246 635 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 RPLP2P05387 115 aaKnown RBP11.94□□□□□ -0.5
SMPD4-213ENST00000454468 ACRP10323 421 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 HLA-DPA1P20036 260 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 TPD52P55327 224 aaPredicted RBP11.94□□□□□ -0.5
SMPD4-213ENST00000454468 NFYCQ13952 458 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 SEMA3AQ14563 771 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 HS6ST3Q8IZP7 471 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 METTL6Q8TCB7 284 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 BRSK1Q8TDC3 778 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 LPGAT1Q92604 370 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 PRPF18Q99633 342 aaKnown RBP11.94□□□□□ -0.5
SMPD4-213ENST00000454468 BEGAINQ9BUH8 593 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 ADGRE3Q9BY15 652 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 PIDD1Q9HB75 910 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 TLR9Q9NR96 1032 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 POLR3BQ9NW08 1133 aaPredicted RBP11.94□□□□□ -0.5
SMPD4-213ENST00000454468 INPP4BO15327 924 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 GMNNO75496 209 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 HSPA8P11142 646 aaKnown RBP11.94□□□□□ -0.5
SMPD4-213ENST00000454468 COL6A2P12110 1019 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 LPOP22079 712 aaPredicted RBP11.94□□□□□ -0.5
SMPD4-213ENST00000454468 AKT1P31749 480 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 FOLH1Q04609 750 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 ELAVL2Q12926 359 aaKnown RBP11.94□□□□□ -0.5
SMPD4-213ENST00000454468 ARHGEF7Q14155 803 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 NR6A1Q15406 480 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 MAPRE2Q15555 327 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 TIGD2Q4W5G0 525 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 MTX3Q5HYI7 312 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 OTOP2Q7RTS6 562 aa11.94□□□□□ -0.5
SMPD4-213ENST00000454468 GPSM1Q86YR5 675 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms