RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 PCDHGC4Q9Y5F7 938 aa18.03■□□□□ 0.48
SQSTM1-204ENST00000453046 MYLKQ15746 1914 aa18.03■□□□□ 0.48
SQSTM1-204ENST00000453046 ADAMTS20P59510 1910 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 CACNB4O00305 520 aaPredicted RBP18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 LIASO43766 372 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 SOCS5O75159 536 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 USP12O75317 370 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 CSO75390 466 aaKnown RBP18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 TNFP01375 233 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 ACTN2P35609 894 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 MMP13P45452 471 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 NR2C2P49116 596 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 OTUD4Q01804 1114 aaKnown RBP18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 RALGDSQ12967 914 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 PAFAH1B3Q15102 231 aaKnown RBP18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 CRTC1Q6UUV9 634 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 BZW1Q7L1Q6 419 aaKnown RBP18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 GKN2Q86XP6 184 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 KLHL7Q8IXQ5 586 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 SLC35F3Q8IY50 421 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 PLA2G15Q8NCC3 412 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 SLC35B2Q8TB61 432 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 ACTL9Q8TC94 416 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 ATG4AQ8WYN0 398 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 P3H4Q92791 437 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 SLCO2A1Q92959 643 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 NAT6Q93015 286 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 PADI4Q9UM07 663 aa18.02■□□□□ 0.48
SQSTM1-204ENST00000453046 CACNA1GO43497 2377 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 ITPR1Q14643 2758 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 TLX3O43711 291 aaPredicted RBP18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 MFSD11O43934 449 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 ZNF189O75820 626 aaPredicted RBP18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 PEX11BO96011 259 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 CPP00450 1065 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 CELA2BP08218 269 aaPredicted RBP18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 PECAM1P16284 738 aaPredicted RBP18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 KELP23276 732 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 COILP38432 576 aaPredicted RBP18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 MAXP61244 160 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 ITKQ08881 620 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 DENND2CQ68D51 928 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 CCDC137Q6PK04 289 aaKnown RBP18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 MAATS1Q7Z4T9 603 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 LRRC49Q8IUZ0 686 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 SDR16C5Q8N3Y7 309 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 GRK7Q8WTQ7 553 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 C1orf54Q8WWF1 131 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 FGF11Q92914 225 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 HAUS1Q96CS2 278 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 NSMCE3Q96MG7 304 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 MGME1Q9BQP7 344 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 SYNDIG1Q9H7V2 258 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 NOD2Q9HC29 1040 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 SIRPGQ9P1W8 387 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 B4GALT6Q9UBX8 382 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 MOSPD1Q9UJG1 213 aa18.01■□□□□ 0.47
SQSTM1-204ENST00000453046 NBEAQ8NFP9 2946 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 HTRA2O43464 458 aaPredicted RBP18■□□□□ 0.47
SQSTM1-204ENST00000453046 MPOP05164 745 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 CR2P20023 1033 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 EIF2S3P41091 472 aaKnown RBP18■□□□□ 0.47
SQSTM1-204ENST00000453046 KIAA1024LP59773 190 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 GABREP78334 506 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 OASLQ15646 514 aaKnown RBP18■□□□□ 0.47
SQSTM1-204ENST00000453046 RALGPS1Q5JS13 557 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 PERM1Q5SV97 790 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 LVRNQ6Q4G3 990 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 LSMEM2Q8N112 164 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 PGBD5Q8N414 524 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 ARL10Q8N8L6 244 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 OR56A4Q8NGH8 313 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 OLFM3Q96PB7 478 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 NT5MQ9NPB1 228 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 FEZ2Q9UHY8 353 aaPredicted RBP18■□□□□ 0.47
SQSTM1-204ENST00000453046 DNPEPQ9ULA0 475 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 PHTF1Q9UMS5 762 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 GPR34Q9UPC5 381 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 ANKRD36A6QL64 1941 aa18■□□□□ 0.47
SQSTM1-204ENST00000453046 LRRK1Q38SD2 2015 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 FAM187AA6NFU0 413 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 RAD51CO43502 376 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 ECEL1O95672 775 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 GAS8O95995 478 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 CYP2A6P11509 494 aaPredicted RBP17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 VIPR1P32241 457 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 EIF3EP60228 445 aaKnown RBP17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 DR1Q01658 176 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 GBE1Q04446 702 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 XRCC4Q13426 336 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 ISXQ2M1V0 245 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 TBC1D25Q3MII6 688 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 ARMC12Q5T9G4 340 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 PNCKQ6P2M8 343 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 TTC27Q6P3X3 843 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 RBM44Q6ZP01 1051 aaKnown RBP17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 SYDE1Q6ZW31 735 aaPredicted RBP17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 CDKL3Q8IVW4 592 aaPredicted RBP17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 NDUFAF2Q8N183 169 aa17.99■□□□□ 0.47
SQSTM1-204ENST00000453046 WDR48Q8TAF3 677 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms