RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 CD27P26842 260 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 NMBRP28336 390 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 ECHS1P30084 290 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 AKT2P31751 481 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 SPAM1P38567 509 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 TMPRSS15P98073 1019 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 DPTQ07507 201 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 SIM2Q14190 667 aaPredicted RBP15.73■□□□□ 0.11
USP40-206ENST00000443711 WSCD2Q2TBF2 565 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 PLK5Q496M5 336 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 ANKRD20A4Q4UJ75 823 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 WDR45BQ5MNZ6 344 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 HP1BP3Q5SSJ5 553 aaPredicted RBP15.73■□□□□ 0.11
USP40-206ENST00000443711 PMS2CLQ68D20 193 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 ESRP1Q6NXG1 681 aaKnown RBP15.73■□□□□ 0.11
USP40-206ENST00000443711 WDR93Q6P2C0 686 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 ZC3H14Q6PJT7 736 aaKnown RBP15.73■□□□□ 0.11
USP40-206ENST00000443711 TMEM135Q86UB9 458 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 ANKMY2Q8IV38 441 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 SLC41A1Q8IVJ1 513 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 ZBED8Q8IZ13 594 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 FBXO36Q8NEA4 188 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 DENND6BQ8NEG7 585 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 DTX3LQ8TDB6 740 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 PYROXD1Q8WU10 500 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 CENPTQ96BT3 561 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 AP2M1Q96CW1 435 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 CDKN2AIPNLQ96HQ2 116 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 ZC3H10Q96K80 434 aaKnown RBP15.73■□□□□ 0.11
USP40-206ENST00000443711 ZNF778Q96MU6 729 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 RIOK2Q9BVS4 552 aaKnown RBP15.73■□□□□ 0.11
USP40-206ENST00000443711 TREX1Q9NSU2 369 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 SLC2A6Q9UGQ3 507 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 ZC3H7BQ9UGR2 993 aaKnown RBP15.73■□□□□ 0.11
USP40-206ENST00000443711 CD84Q9UIB8 345 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 FKBPLQ9UIM3 349 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 APPL1Q9UKG1 709 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 RPS6KL1Q9Y6S9 549 aa15.73■□□□□ 0.11
USP40-206ENST00000443711 ZNF106Q9H2Y7 1883 aaKnown RBP15.72■□□□□ 0.11
USP40-206ENST00000443711 GLYATL1P3A0A0U1RQE8 302 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 H7C0S8 307 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 USP1O94782 785 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 PYGLP06737 847 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 PAMP19021 973 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 MAGEA4P43358 317 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 DHPSP49366 369 aaPredicted RBP15.72■□□□□ 0.11
USP40-206ENST00000443711 PRAMEP78395 509 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 ACVR1Q04771 509 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 ALS2CLQ60I27 953 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 CES3Q6UWW8 571 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 IGDCC3Q8IVU1 814 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 TP53I13Q8NBR0 393 aaPredicted RBP15.72■□□□□ 0.11
USP40-206ENST00000443711 OR13J1Q8NGT2 312 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 DNASE2BQ8WZ79 361 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 SCAMP4Q969E2 229 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 ZNF669Q96BR6 464 aaPredicted RBP15.72■□□□□ 0.11
USP40-206ENST00000443711 MFSD3Q96ES6 412 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 TBATAQ96M53 351 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 KLF6Q99612 283 aaPredicted RBP15.72■□□□□ 0.11
USP40-206ENST00000443711 PARD6BQ9BYG5 372 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 IRF2BPLQ9H1B7 796 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 EBF2Q9HAK2 575 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 IL26Q9NPH9 171 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 EIF2B4Q9UI10 523 aaKnown RBP15.72■□□□□ 0.11
USP40-206ENST00000443711 FNDC3AQ9Y2H6 1198 aaKnown RBP15.72■□□□□ 0.11
USP40-206ENST00000443711 HS3ST3A1Q9Y663 406 aa15.72■□□□□ 0.11
USP40-206ENST00000443711 SDK1Q7Z5N4 2213 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 FPGTO14772 594 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 RAD51BO15315 384 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 GPR1P46091 355 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 ARSDP51689 593 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 VSNL1P62760 191 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 XIAPP98170 497 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 SLMAPQ14BN4 828 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 FASTKD3Q14CZ7 662 aaKnown RBP15.71■□□□□ 0.11
USP40-206ENST00000443711 IRF4Q15306 451 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 SPANXN3Q5MJ09 141 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 HENMT1Q5T8I9 393 aaKnown RBP15.71■□□□□ 0.11
USP40-206ENST00000443711 LYSMD4Q5XG99 296 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 KIAA0930Q6ICG6 404 aaPredicted RBP15.71■□□□□ 0.11
USP40-206ENST00000443711 PNCKQ6P2M8 343 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 FAM151BQ6UXP7 276 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 ARMCX6Q7L4S7 300 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 PALM2Q8IXS6 379 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 RGL4Q8IZJ4 473 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 TRAM1L1Q8N609 369 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 OR6P1Q8NGX9 317 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 HDAC10Q969S8 669 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 CFAP36Q96G28 342 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 SERAC1Q96JX3 654 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 FCRL3Q96P31 734 aaPredicted RBP15.71■□□□□ 0.11
USP40-206ENST00000443711 ZSCAN5AQ9BUG6 496 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 SPATA16Q9BXB7 569 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 KCNH6Q9H252 994 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 MBNL1Q9NR56 388 aaKnown RBP15.71■□□□□ 0.11
USP40-206ENST00000443711 SLC30A1Q9Y6M5 507 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 FAM169AQ9Y6X4 670 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 R4GN57 208 aa15.71■□□□□ 0.11
USP40-206ENST00000443711 CCDC162PA2VCL2 907 aa15.7■□□□□ 0.1
USP40-206ENST00000443711 CCL22O00626 93 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms