RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 HDAC10Q969S8 669 aa16.38■□□□□ 0.21
CLCNKA-203ENST00000439316 ZNF512Q96ME7 567 aaPredicted RBP16.38■□□□□ 0.21
CLCNKA-203ENST00000439316 ASB2Q96Q27 587 aa16.38■□□□□ 0.21
CLCNKA-203ENST00000439316 CRISPLD2Q9H0B8 497 aa16.38■□□□□ 0.21
CLCNKA-203ENST00000439316 PRDM5Q9NQX1 630 aaPredicted RBP16.38■□□□□ 0.21
CLCNKA-203ENST00000439316 DDX18Q9NVP1 670 aaKnown RBP16.38■□□□□ 0.21
CLCNKA-203ENST00000439316 NUDT5Q9UKK9 219 aa16.38■□□□□ 0.21
CLCNKA-203ENST00000439316 BPTFQ12830 3046 aa16.38■□□□□ 0.21
CLCNKA-203ENST00000439316 A0A0J9YYE9 177 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 A0A1W2PQH9 124 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 PITPNM1O00562 1244 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 CCL22O00626 93 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 NME4O00746 187 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 FGF4P08620 206 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 CD1DP15813 335 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 TUBA4AP68366 448 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 SH3BP2P78314 561 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 PRAMEP78395 509 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 TSPY1Q01534 308 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 ILF2Q12905 390 aaKnown RBP16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 PITRM1Q5JRX3 1037 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 SIRPB2Q5JXA9 342 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 MARC1Q5VT66 337 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 SLC39A5Q6ZMH5 540 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 ZBTB49Q6ZSB9 765 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 PHYKPLQ8IUZ5 450 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 TEX26Q8N6G2 289 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 PACRGLQ8N7B6 248 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 DBF4BQ8NFT6 615 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 HM13Q8TCT9 377 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 HASPINQ8TF76 798 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 CANT1Q8WVQ1 401 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 RMND5BQ96G75 393 aaPredicted RBP16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 KLHL5Q96PQ7 755 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 TCF12Q99081 682 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 HOPXQ9BPY8 73 aaPredicted RBP16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 CCM2LQ9NUG4 571 aaPredicted RBP16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 MAP10Q9P2G4 905 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 DNAJC15Q9Y5T4 150 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 OR51F1A6NGY5 319 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 AQP12BA6NM10 295 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 PLOD2O00469 737 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 NR5A2O00482 541 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 SOCS2O14508 198 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 LDB2O43679 373 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 TRMUO75648 421 aaKnown RBP16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 CDK14O94921 469 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 EOMESO95936 686 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 ATXN1LP0C7T5 689 aaKnown RBP16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 HAPLN1P10915 354 aaPredicted RBP16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 RHOQP17081 205 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 GRIA3P42263 894 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 SUOXP51687 545 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 ATP6V0D1P61421 351 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 HPCAP84074 193 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 TIAL1Q01085 375 aaKnown RBP eCLIP16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 PRKCQQ04759 706 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 ACVR1Q04771 509 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 ITKQ08881 620 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 KIF19Q2TAC6 998 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 KRT80Q6KB66 452 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 SPATA2LQ8IUW3 424 aaPredicted RBP16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 AQP12AQ8IXF9 295 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 THEM5Q8N1Q8 247 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 FIBCD1Q8N539 461 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 TRIML2Q8N7C3 387 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 PTGR2Q8N8N7 351 aaPredicted RBP16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 PPWD1Q96BP3 646 aaKnown RBP16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 SLC39A13Q96H72 371 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 TRIM15Q9C019 465 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 TMEM248Q9NWD8 314 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 RSL24D1Q9UHA3 163 aaKnown RBP16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 NDUFAF1Q9Y375 327 aa16.37■□□□□ 0.21
CLCNKA-203ENST00000439316 DOCK4Q8N1I0 1966 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 HSD17B1P14061 328 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 HOXB8P17481 243 aaPredicted RBP16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 CKMT2P17540 419 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 CAPN3P20807 821 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 GRIK1P39086 918 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 CDK9P50750 372 aaKnown RBP16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 CDH13P55290 713 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 FAM189BP81408 668 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 KANK2Q63ZY3 851 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 MSANTD2Q6P1R3 559 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 ZNF549Q6P9A3 640 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 FBXO46Q6PJ61 603 aaPredicted RBP16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 TFAP2DQ7Z6R9 452 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 MINDY1Q8N5J2 469 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 MFSD2AQ8NA29 543 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 ARRDC2Q8TBH0 407 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 FAM110BQ8TC76 370 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 DIS3LQ8TF46 1054 aaKnown RBP16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 TWIST2Q8WVJ9 160 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 TFAP2CQ92754 450 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 LRCH3Q96II8 777 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 CAAP1Q9H8G2 361 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 SP110Q9HB58 689 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 TLR6Q9Y2C9 796 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 KCTD3Q9Y597 815 aa16.36■□□□□ 0.21
CLCNKA-203ENST00000439316 LOC285095A0A1B0GVY8 99 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms