RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 TMEM114B3SHH9 223 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 MAFKO60675 156 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 RSL1D1O76021 490 aaKnown RBP8.64□□□□□ -1.03
USP40-203ENST00000427112 LRATO95237 230 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 GOT2P00505 430 aaKnown RBP8.64□□□□□ -1.03
USP40-203ENST00000427112 CTPS1P17812 591 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 NPY2RP49146 381 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 ZRANB3Q5FWF4 1079 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 AGAP9Q5VTM2 703 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 KCTD11Q693B1 232 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 ZDHHC17Q8IUH5 632 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 SPATA2LQ8IUW3 424 aaPredicted RBP8.64□□□□□ -1.03
USP40-203ENST00000427112 ZC3H7AQ8IWR0 971 aaKnown RBP8.64□□□□□ -1.03
USP40-203ENST00000427112 KIAA2013Q8IYS2 634 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 MARVELD2Q8N4S9 558 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 FNDC5Q8NAU1 212 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 ST13P5Q8NFI4 369 aaPredicted RBP8.64□□□□□ -1.03
USP40-203ENST00000427112 GAB3Q8WWW8 586 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 PBXIP1Q96AQ6 731 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 MRPS26Q9BYN8 205 aaKnown RBP8.64□□□□□ -1.03
USP40-203ENST00000427112 ZFYVE28Q9HCC9 887 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 RNF112Q9ULX5 631 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 ST14Q9Y5Y6 855 aa8.64□□□□□ -1.03
USP40-203ENST00000427112 PRSS51A0A1B0GVH4 220 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 CCDC162PA2VCL2 907 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 E9PAM4 449 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 H6PDO95479 791 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 MAP4P27816 1152 aaKnown RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 GKP32189 559 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 NR1H2P55055 460 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 FAM189BP81408 668 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 OCA2Q04671 838 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 SELPLGQ14242 412 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 AP5B1Q2VPB7 878 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 CMPK2Q5EBM0 449 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 FAM91A1Q658Y4 838 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 BTLAQ7Z6A9 289 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 ARHGAP12Q8IWW6 846 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 FAM86B1Q8N7N1 296 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 DRAXINQ8NBI3 349 aaPredicted RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 SIDT2Q8NBJ9 832 aaKnown RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 MRPL57Q9BQC6 102 aaKnown RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 OSBPL11Q9BXB4 747 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 CD274Q9NZQ7 290 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 EIF2B4Q9UI10 523 aaKnown RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 NDUFAF1Q9Y375 327 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 HS3ST4Q9Y661 456 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 NINQ8N4C6 2090 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 LINC00854A0A1B0GVQ3 168 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 SMIM31A0A1B0GVY4 71 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 TRPC5OSA6NMA1 111 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 MUSKO15146 869 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 CLASP2O75122 1294 aaKnown RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 CDK14O94921 469 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 OR4F21O95013 312 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 IL1BP01584 269 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 RPL17P18621 184 aaKnown RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 ARCN1P48444 511 aaKnown RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 SERPINH1P50454 418 aaKnown RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 ESRRGP62508 458 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 ENPEPQ07075 957 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 DCTN2Q13561 401 aaKnown RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 AARS2Q5JTZ9 985 aaKnown RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 MARC1Q5VT66 337 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 C9orf131Q5VYM1 1079 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 OVOS1Q6IE37 1185 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 POTEHQ6S545 545 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 HEATR4Q86WZ0 1026 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 IFNLR1Q8IU57 520 aaPredicted RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 SLC15A3Q8IY34 581 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 PHACTR4Q8IZ21 702 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 ADCY4Q8NFM4 1077 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 OR52B6Q8NGF0 335 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 IGSF8Q969P0 613 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 HAPLN3Q96S86 360 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 THUMPD3Q9BV44 507 aaKnown RBP8.63□□□□□ -1.03
USP40-203ENST00000427112 ADI1Q9BV57 179 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 CXorf21Q9HAI6 301 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 AMBNQ9NP70 447 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 HPS4Q9NQG7 708 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 CMTM6Q9NX76 183 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 MAP10Q9P2G4 905 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 FADS3Q9Y5Q0 445 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 LCTP09848 1927 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 RLFQ13129 1914 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 SLC12A8A0AV02 714 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 ARVCFO00192 962 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 C1QCP02747 245 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 UGT1A1P22309 533 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 TGFBR1P36897 503 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 PSEN2P49810 448 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 HTR6P50406 440 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 GATMP50440 423 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 KCNQ1P51787 676 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 OR4D2P58180 307 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 GALNT2Q10471 571 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 GTDC1Q4AE62 458 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 UNC50Q53HI1 259 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 C6orf183Q5T699 404 aa8.63□□□□□ -1.03
USP40-203ENST00000427112 CYHR1Q6ZMK1 362 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms