RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 C14orf28Q4W4Y0 310 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 TAF1BQ53T94 588 aaPredicted RBP12.96□□□□□ -0.33
VRK3-203ENST00000424804 NCBP2-AS2Q69YL0 99 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 RAD9BQ6WBX8 426 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 RFLNAQ6ZTI6 216 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 ZNF438Q7Z4V0 828 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 HSD11B1LQ7Z5J1 315 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 TAF8Q7Z7C8 310 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 KIAA1328Q86T90 577 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 RFX6Q8HWS3 928 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 RHOT1Q8IXI2 618 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 Q8N9G6 341 aaPredicted RBP12.96□□□□□ -0.33
VRK3-203ENST00000424804 ACRBPQ8NEB7 543 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 FAM46DQ8NEK8 389 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 OR6C4Q8NGE1 309 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 ATL2Q8NHH9 583 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 PDCD6IPQ8WUM4 868 aaKnown RBP12.96□□□□□ -0.33
VRK3-203ENST00000424804 CCDC97Q96F63 343 aaPredicted RBP12.96□□□□□ -0.33
VRK3-203ENST00000424804 ZNF599Q96NL3 588 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 SMIM14Q96QK8 99 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 NUDCD1Q96RS6 583 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 FRMD8Q9BZ67 464 aaPredicted RBP12.96□□□□□ -0.33
VRK3-203ENST00000424804 SEMA6CQ9H3T2 930 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 SYNDIG1Q9H7V2 258 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 NOD2Q9HC29 1040 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 CYP4F12Q9HCS2 524 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 LRIT1Q9P2V4 623 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 SEPT3Q9UH03 358 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 PPIL1Q9Y3C6 166 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 TTLL3Q9Y4R7 772 aa12.96□□□□□ -0.33
VRK3-203ENST00000424804 ZFC3H1O60293 1989 aaKnown RBP12.96□□□□□ -0.34
VRK3-203ENST00000424804 PRSS38A1L453 326 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 C9orf172C9J069 976 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 CACNB4O00305 520 aaPredicted RBP12.95□□□□□ -0.34
VRK3-203ENST00000424804 NVLO15381 856 aaKnown RBP12.95□□□□□ -0.34
VRK3-203ENST00000424804 NUDT21O43809 227 aaKnown RBP12.95□□□□□ -0.34
VRK3-203ENST00000424804 FZD6O60353 706 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 HEXIM1O94992 359 aaKnown RBP12.95□□□□□ -0.34
VRK3-203ENST00000424804 LCA5LO95447 670 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 SOD1P00441 154 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 CDC25BP30305 580 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 SLC1A1P43005 524 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 RENBPP51606 427 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 ARSDP51689 593 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 MAXP61244 160 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 POLR2LP62875 67 aaKnown RBP12.95□□□□□ -0.34
VRK3-203ENST00000424804 NR1D2Q14995 579 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 MARC1Q5VT66 337 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 CCDC81Q6ZN84 652 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 TECPR1Q7Z6L1 1165 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 DTX1Q86Y01 620 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 CCNYQ8ND76 341 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 FAM71BQ8TC56 605 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 PIH1D2Q8WWB5 315 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 SCARF2Q96GP6 870 aaPredicted RBP12.95□□□□□ -0.34
VRK3-203ENST00000424804 ZNF830Q96NB3 372 aaPredicted RBP12.95□□□□□ -0.34
VRK3-203ENST00000424804 TMEM74Q96NL1 305 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 MCCC1Q96RQ3 725 aaPredicted RBP12.95□□□□□ -0.34
VRK3-203ENST00000424804 CCNL2Q96S94 520 aaPredicted RBP12.95□□□□□ -0.34
VRK3-203ENST00000424804 MGME1Q9BQP7 344 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 NT5MQ9NPB1 228 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 HEY1Q9Y5J3 304 aa12.95□□□□□ -0.34
VRK3-203ENST00000424804 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.94□□□□□ -0.34
VRK3-203ENST00000424804 NPIPB15A6NHN6 443 aaPredicted RBP12.94□□□□□ -0.34
VRK3-203ENST00000424804 B8ZZF3 427 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 TMX2-CTNND1H3BSU7 103 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 APOL1O14791 398 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 SOCS5O75159 536 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 MYCLP1P12525 358 aaPredicted RBP12.94□□□□□ -0.34
VRK3-203ENST00000424804 CCNB1P14635 433 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 VIPR1P32241 457 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 ETV3P41162 512 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 MMP13P45452 471 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 MAZP56270 477 aaKnown RBP12.94□□□□□ -0.34
VRK3-203ENST00000424804 GBE1Q04446 702 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 C16orf72Q14CZ0 275 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 ACOX1Q15067 660 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 PAFAH1B3Q15102 231 aaKnown RBP12.94□□□□□ -0.34
VRK3-203ENST00000424804 KAZNQ674X7 775 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 Q6ZVL8 140 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 DAAM2Q86T65 1068 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 TSPAN33Q86UF1 283 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 CCDC50Q8IVM0 306 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 TEX26Q8N6G2 289 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 PQLC3Q8N755 202 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 PATE1Q8WXA2 126 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 DTD2Q96FN9 168 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 SCRN2Q96FV2 425 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 MED8Q96G25 268 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 RNF157Q96PX1 679 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 DESI2Q9BSY9 194 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 WDR26Q9H7D7 661 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 DDX56Q9NY93 547 aaKnown RBP12.94□□□□□ -0.34
VRK3-203ENST00000424804 FOXJ2Q9P0K8 574 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 IMPACTQ9P2X3 320 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 PISDQ9UG56 409 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 PLEKHM1Q9Y4G2 1056 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 LOXL2Q9Y4K0 774 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 ALG6Q9Y672 507 aa12.94□□□□□ -0.34
VRK3-203ENST00000424804 PRAMEF33A0A0G2JMD5 474 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms