RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 CDK9P50750 372 aaKnown RBP9.85□□□□□ -0.83
SS18-203ENST00000415083 CCT8P50990 548 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 NRG1Q02297 640 aaPredicted RBP9.85□□□□□ -0.83
SS18-203ENST00000415083 CACNB2Q08289 660 aaPredicted RBP9.85□□□□□ -0.83
SS18-203ENST00000415083 MAP7Q14244 749 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 KIAA2013Q8IYS2 634 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 PTGR2Q8N8N7 351 aaPredicted RBP9.85□□□□□ -0.83
SS18-203ENST00000415083 TWIST2Q8WVJ9 160 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 EXT2Q93063 718 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 ABTB1Q969K4 478 aaPredicted RBP9.85□□□□□ -0.83
SS18-203ENST00000415083 TMEM125Q96AQ2 219 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 CCDC97Q96F63 343 aaPredicted RBP9.85□□□□□ -0.83
SS18-203ENST00000415083 NAA50Q9GZZ1 169 aaKnown RBP9.85□□□□□ -0.83
SS18-203ENST00000415083 Q9H521 79 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 ZNF408Q9H9D4 720 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 UXTQ9UBK9 157 aaPredicted RBP9.85□□□□□ -0.83
SS18-203ENST00000415083 TMCO1Q9UM00 188 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 GPR45Q9Y5Y3 372 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 ST14Q9Y5Y6 855 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 IGLV3-10A0A075B6K4 115 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 CCDC162PA2VCL2 907 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 ZNF189O75820 626 aaPredicted RBP9.85□□□□□ -0.83
SS18-203ENST00000415083 PAPSS2O95340 614 aaPredicted RBP9.85□□□□□ -0.83
SS18-203ENST00000415083 FGF4P08620 206 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 LINC00032P0C843 101 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 NCK1P16333 377 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 ZNF37AP17032 561 aaPredicted RBP9.85□□□□□ -0.83
SS18-203ENST00000415083 HRH2P25021 359 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 CYP2C18P33260 490 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 HSPA13P48723 471 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 AGTR2P50052 363 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 HK3P52790 923 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 DSC3Q14574 896 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 ATP6AP1Q15904 470 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 ANKDD1AQ495B1 522 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 SLC36A3Q495N2 470 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 DHFR2Q86XF0 187 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 MFSD2AQ8NA29 543 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 ZC3H15Q8WU90 426 aaKnown RBP9.85□□□□□ -0.83
SS18-203ENST00000415083 VPS33AQ96AX1 596 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 SLC25A23Q9BV35 468 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 ABCC13Q9NSE7 274 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 SLC38A7Q9NVC3 462 aa9.85□□□□□ -0.83
SS18-203ENST00000415083 SLC7A4O43246 635 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 SRP72O76094 671 aaKnown RBP9.84□□□□□ -0.83
SS18-203ENST00000415083 TMCC1O94876 653 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 ATE1O95260 518 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 SOX11P35716 441 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 GALK1P51570 392 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 DDR2Q16832 855 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 NADSYN1Q6IA69 706 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 LYSMD3Q7Z3D4 306 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 SPRED1Q7Z699 444 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 ADAMTS16Q8TE57 1224 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 SNRNP27Q8WVK2 155 aaKnown RBP9.84□□□□□ -0.83
SS18-203ENST00000415083 MYRFLQ96LU7 910 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 TMEM74Q96NL1 305 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 LTB4R2Q9NPC1 389 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 SDR39U1Q9NRG7 319 aaPredicted RBP9.84□□□□□ -0.83
SS18-203ENST00000415083 TBC1D13Q9NVG8 400 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 SPO11Q9Y5K1 396 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 UPK1AO00322 258 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 ENPP3O14638 875 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 ARPC2O15144 300 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 SOAT2O75908 522 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 VNN2O95498 520 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 PCSK1P29120 753 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 CD52P31358 61 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 GRK4P32298 578 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 RGRP47804 291 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 MAP2K5Q13163 448 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 GALNT3Q14435 633 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 SAMD4BQ5PRF9 694 aaKnown RBP9.84□□□□□ -0.83
SS18-203ENST00000415083 LCN8Q6JVE9 175 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 DHRS4L2Q6PKH6 230 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 MINDY1Q8N5J2 469 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 ZUFSPQ96AP4 578 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 ISG20Q96AZ6 181 aaKnown RBP9.84□□□□□ -0.83
SS18-203ENST00000415083 TRIB3Q96RU7 358 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 CCT7Q99832 543 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 NPLQ9BXD5 320 aaPredicted RBP9.84□□□□□ -0.83
SS18-203ENST00000415083 PRKD2Q9BZL6 878 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 CATSPERBQ9H7T0 1116 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 CARS2Q9HA77 564 aaKnown RBP9.84□□□□□ -0.83
SS18-203ENST00000415083 RSL24D1Q9UHA3 163 aaKnown RBP9.84□□□□□ -0.83
SS18-203ENST00000415083 TIMM22Q9Y584 194 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 USP34Q70CQ2 3546 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 BMP10O95393 424 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 TSPAN12O95859 305 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 MT-ND1P03886 318 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 RBP1P09455 135 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 HSD17B1P14061 328 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 MYF6P23409 242 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 ATP6V0D1P61421 351 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 FSCN1Q16658 493 aaKnown RBP9.84□□□□□ -0.83
SS18-203ENST00000415083 PFKFB4Q16877 469 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 TMEM259Q4ZIN3 620 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 FBXL22Q6P050 247 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 BLOC1S3Q6QNY0 202 aa9.84□□□□□ -0.83
SS18-203ENST00000415083 ZBTB49Q6ZSB9 765 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms