RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 COLEC12Q5KU26 742 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 C3orf14Q9HBI5 128 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 FABP12A6NFH5 140 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 CPNE3O75131 537 aaKnown RBP13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 APLP1P51693 650 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 TBX4P57082 545 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 DET1Q7L5Y6 550 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 RNF180Q86T96 592 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 FAM47BQ8NA70 645 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 IDI2Q9BXS1 227 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 TCF7L1Q9HCS4 588 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 CDK12Q9NYV4 1490 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 TVP23AA6NH52 213 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 CENPBD1B2RD01 187 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 HGFP14210 728 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 GRIA4P48058 902 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 MTX3Q5HYI7 312 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 FAM46CQ5VWP2 391 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 RETSATQ6NUM9 610 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 HSPA12BQ96MM6 686 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 ADGRE2Q9UHX3 823 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 RPL38P63173 70 aaKnown RBP13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 KLHL26Q53HC5 615 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 C5orf34Q96MH7 638 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 XPNPEP3Q9NQH7 507 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 PRPF19Q9UMS4 504 aaKnown RBP13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 CDC42BPBQ9Y5S2 1711 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 FFAR3O14843 346 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 GPR42O15529 346 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 IFNA4P05014 189 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 RAD9BQ6WBX8 426 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 SLC47A2Q86VL8 602 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 OR4C6Q8NH72 309 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 GLS2Q9UI32 602 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 VNN2O95498 520 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 TIE1P35590 1138 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 ADIGQ0VDE8 80 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 YTHDF3Q7Z739 585 aaKnown RBP13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 ZCCHC9Q8N567 271 aaKnown RBP13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 CSGALNACT1Q8TDX6 532 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 ZSWIM3Q96MP5 696 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 OR5B12Q96R08 314 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 SLC39A3Q9BRY0 314 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 CNTNAP2Q9UHC6 1331 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 ZNF20P17024 532 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 DLSTP36957 453 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 ZNF844Q08AG5 666 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 SNAPC2Q13487 334 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 CPTPQ5TA50 214 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 LAPTM4BQ86VI4 370 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 ANKRD13AQ8IZ07 590 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 SLC7A6OSQ96CW6 309 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 ZNF175Q9Y473 711 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 ZNF705EA8MWA4 302 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 DNAJB2P25686 324 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 ACADVLP49748 655 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 NUMBP49757 651 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 C6orf183Q5T699 404 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 AHSA2Q719I0 299 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 RANBP3LQ86VV4 465 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 RNF38Q9H0F5 515 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 FXYD6-FXYD2A0A087WZ82 144 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 OR6C6A6NF89 314 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 MYMKA6NI61 221 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 BBIP1A8MTZ0 92 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 EML1O00423 815 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 SLC2A2P11168 524 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 CASP9P55211 416 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 PRKG2Q13237 762 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 RHBDF1Q96CC6 855 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 FXYD6Q9H0Q3 95 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 KLF15Q9UIH9 416 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 PCDHGB1Q9Y5G3 927 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 GSC2O15499 205 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 LRATO95237 230 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 MAPK12P53778 367 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 IRF8Q02556 426 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 TPGS1Q6ZTW0 290 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 KCTD8Q6ZWB6 473 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 OR10H4Q8NGA5 316 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 MFSD8Q8NHS3 518 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 DNASE1L2Q92874 299 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 C1QBPQ07021 282 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 POLR3BQ9NW08 1133 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 ADAM28Q9UKQ2 775 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 H0Y858 1186 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 H3BUI4 141 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 MAGEA11P43364 429 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 MYL6P60660 151 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 LDLRAP1Q5SW96 308 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 RNASEH2BQ5TBB1 312 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 ZNF565Q8N9K5 539 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 FBXO25Q8TCJ0 367 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 SCGB1C1Q8TD33 95 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 CXorf40BQ96DE9 158 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 NECAB3Q96P71 396 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 ZDHHC6Q9H6R6 413 aa13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 DCP1AQ9NPI6 582 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 PDP1Q9P0J1 537 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-204ENST00000413716 SLC22A3O75751 556 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms