RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 PCSK7Q16549 785 aa18.99■□□□□ 0.63
SF3A1-202ENST00000411423 LVRNQ6Q4G3 990 aa18.99■□□□□ 0.63
SF3A1-202ENST00000411423 NT5DC3Q86UY8 548 aa18.99■□□□□ 0.63
SF3A1-202ENST00000411423 ZC3H18Q86VM9 953 aaKnown RBP18.99■□□□□ 0.63
SF3A1-202ENST00000411423 GKN2Q86XP6 184 aa18.99■□□□□ 0.63
SF3A1-202ENST00000411423 NDUFAF2Q8N183 169 aa18.99■□□□□ 0.63
SF3A1-202ENST00000411423 LRRC57Q8N9N7 239 aa18.99■□□□□ 0.63
SF3A1-202ENST00000411423 GPR156Q8NFN8 814 aa18.99■□□□□ 0.63
SF3A1-202ENST00000411423 EXD1Q8NHP7 514 aa18.99■□□□□ 0.63
SF3A1-202ENST00000411423 TFB1MQ8WVM0 346 aaKnown RBP18.99■□□□□ 0.63
SF3A1-202ENST00000411423 TEKT5Q96M29 485 aa18.99■□□□□ 0.63
SF3A1-202ENST00000411423 BAG1Q99933 345 aaPredicted RBP18.99■□□□□ 0.63
SF3A1-202ENST00000411423 CCDC3Q9BQI4 270 aa18.99■□□□□ 0.63
SF3A1-202ENST00000411423 DESI2Q9BSY9 194 aa18.99■□□□□ 0.63
SF3A1-202ENST00000411423 CARS2Q9HA77 564 aaKnown RBP18.99■□□□□ 0.63
SF3A1-202ENST00000411423 UBP1Q9NZI7 540 aa18.99■□□□□ 0.63
SF3A1-202ENST00000411423 CNOT6Q9ULM6 557 aaKnown RBP18.99■□□□□ 0.63
SF3A1-202ENST00000411423 DOLKQ9UPQ8 538 aa18.99■□□□□ 0.63
SF3A1-202ENST00000411423 TMEM98Q9Y2Y6 226 aa18.99■□□□□ 0.63
SF3A1-202ENST00000411423 PCDHA3Q9Y5H8 950 aa18.99■□□□□ 0.63
SF3A1-202ENST00000411423 RP1P56715 2156 aa18.99■□□□□ 0.63
SF3A1-202ENST00000411423 C1orf232A0A0U1RR37 186 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 FADS2P1A8MWK0 482 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 F5H423 210 aaPredicted RBP18.98■□□□□ 0.63
SF3A1-202ENST00000411423 TLX3O43711 291 aaPredicted RBP18.98■□□□□ 0.63
SF3A1-202ENST00000411423 KELP23276 732 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 AK4P27144 223 aaPredicted RBP18.98■□□□□ 0.63
SF3A1-202ENST00000411423 CDC25BP30305 580 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 PDX1P52945 283 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 NOMO1Q15155 1222 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 PPP2R5EQ16537 467 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 OGFOD3Q6PK18 319 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 DOK6Q6PKX4 331 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 ADAMTSL4Q6UY14 1074 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 BBS12Q6ZW61 710 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 ZNF765Q7L2R6 523 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 LYSMD3Q7Z3D4 306 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 TAF8Q7Z7C8 310 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 CCDC50Q8IVM0 306 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 GPBAR1Q8TDU6 330 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 ALG3Q92685 438 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 CCDC74AQ96AQ1 378 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 COX14Q96I36 57 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 MLPHQ9BV36 600 aaPredicted RBP18.98■□□□□ 0.63
SF3A1-202ENST00000411423 NRSN2Q9GZP1 204 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 SPATS2LQ9NUQ6 558 aaKnown RBP18.98■□□□□ 0.63
SF3A1-202ENST00000411423 KCTD5Q9NXV2 234 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 NCKIPSDQ9NZQ3 722 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 SLC17A4Q9Y2C5 497 aa18.98■□□□□ 0.63
SF3A1-202ENST00000411423 OAS3Q9Y6K5 1087 aaKnown RBP18.98■□□□□ 0.63
SF3A1-202ENST00000411423 PMS2P1A4D2B8 440 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 INPP4BO15327 924 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 CSO75390 466 aaKnown RBP18.97■□□□□ 0.63
SF3A1-202ENST00000411423 NFKB1P19838 968 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 CA4P22748 312 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 CTNNA2P26232 953 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 GNPDA1P46926 289 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 SPINT3P49223 89 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 HENMT1Q5T8I9 393 aaKnown RBP18.97■□□□□ 0.63
SF3A1-202ENST00000411423 KDELC1Q6UW63 502 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 NLRP8Q86W28 1048 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 ZNF567Q8N184 647 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 SDR16C5Q8N3Y7 309 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 FAM46DQ8NEK8 389 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 P3H4Q92791 437 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 NXPE2Q96DL1 559 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 SCARF2Q96GP6 870 aaPredicted RBP18.97■□□□□ 0.63
SF3A1-202ENST00000411423 RBM41Q96IZ5 413 aaKnown RBP18.97■□□□□ 0.63
SF3A1-202ENST00000411423 QKIQ96PU8 341 aaKnown RBP eCLIP18.97■□□□□ 0.63
SF3A1-202ENST00000411423 FAM118BQ9BPY3 351 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 GORASP1Q9BQQ3 440 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 LUC7LQ9NQ29 371 aaKnown RBP18.97■□□□□ 0.63
SF3A1-202ENST00000411423 HAUS2Q9NVX0 235 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 SHOC2Q9UQ13 582 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 SPO11Q9Y5K1 396 aa18.97■□□□□ 0.63
SF3A1-202ENST00000411423 DSPP15924 2871 aaKnown RBP18.96■□□□□ 0.63
SF3A1-202ENST00000411423 KNTC1P50748 2209 aa18.96■□□□□ 0.63
SF3A1-202ENST00000411423 PDE2AO00408 941 aaPredicted RBP18.96■□□□□ 0.63
SF3A1-202ENST00000411423 AURKAO14965 403 aa18.96■□□□□ 0.63
SF3A1-202ENST00000411423 BRINP1O60477 761 aa18.96■□□□□ 0.63
SF3A1-202ENST00000411423 PMPCBO75439 489 aa18.96■□□□□ 0.63
SF3A1-202ENST00000411423 IVLP07476 585 aa18.96■□□□□ 0.63
SF3A1-202ENST00000411423 RPIAP49247 311 aa18.96■□□□□ 0.63
SF3A1-202ENST00000411423 CDK18Q07002 472 aa18.96■□□□□ 0.63
SF3A1-202ENST00000411423 ISXQ2M1V0 245 aa18.96■□□□□ 0.63
SF3A1-202ENST00000411423 NRSN1Q8IZ57 195 aa18.96■□□□□ 0.63
SF3A1-202ENST00000411423 GLMNQ92990 594 aa18.96■□□□□ 0.63
SF3A1-202ENST00000411423 OXNAD1Q96HP4 312 aaPredicted RBP18.96■□□□□ 0.63
SF3A1-202ENST00000411423 ABCG4Q9H172 646 aa18.96■□□□□ 0.63
SF3A1-202ENST00000411423 EVA1BQ9NVM1 165 aa18.96■□□□□ 0.63
SF3A1-202ENST00000411423 GPSM3Q9Y4H4 160 aa18.96■□□□□ 0.63
SF3A1-202ENST00000411423 ENTPD2Q9Y5L3 495 aa18.96■□□□□ 0.63
SF3A1-202ENST00000411423 APC2O95996 2303 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 A0A1W2PQM1 296 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 B4DGG1 531 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 NTN3O00634 580 aaPredicted RBP18.95■□□□□ 0.62
SF3A1-202ENST00000411423 RBL1P28749 1068 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 ADCY8P40145 1251 aa18.95■□□□□ 0.62
SF3A1-202ENST00000411423 NAP1L1P55209 391 aaKnown RBP18.95■□□□□ 0.62
SF3A1-202ENST00000411423 CCL7P80098 99 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms