RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 TSPAN17Q96FV3 270 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 TRIM62Q9BVG3 475 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 PRKD2Q9BZL6 878 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 SMG9Q9H0W8 520 aaKnown RBP13.36□□□□□ -0.27
VPS54-203ENST00000409558 TNKS2Q9H2K2 1166 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 Q9Y3F1 56 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 ASB1Q9Y576 335 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 A0A1B0GVG6 124 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 TARM1B6A8C7 271 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 SNX2O60749 519 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 UGT1A1P22309 533 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 UGT1A4P22310 534 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 MZF1P28698 734 aaPredicted RBP13.36□□□□□ -0.27
VPS54-203ENST00000409558 MC4RP32245 332 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 UGT1A3P35503 534 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 UGT1A5P35504 534 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 ALDH7A1P49419 539 aaKnown RBP13.36□□□□□ -0.27
VPS54-203ENST00000409558 CLCN5P51795 746 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 GNA12Q03113 381 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 SERINC3Q13530 473 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 UNC50Q53HI1 259 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 RABL3Q5HYI8 236 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 CDC26Q8NHZ8 85 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 GPR63Q9BZJ6 419 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 SPATS2LQ9NUQ6 558 aaKnown RBP13.36□□□□□ -0.27
VPS54-203ENST00000409558 SLAMF8Q9P0V8 285 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 EIF2B4Q9UI10 523 aaKnown RBP13.36□□□□□ -0.27
VPS54-203ENST00000409558 DNAJC15Q9Y5T4 150 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.36□□□□□ -0.27
VPS54-203ENST00000409558 PRRG1O14668 218 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 SNRPB2P08579 225 aaKnown RBP13.36□□□□□ -0.27
VPS54-203ENST00000409558 ALDOCP09972 364 aaKnown RBP13.36□□□□□ -0.27
VPS54-203ENST00000409558 ZNF177Q13360 481 aaPredicted RBP13.36□□□□□ -0.27
VPS54-203ENST00000409558 TIGD2Q4W5G0 525 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 SLC44A4Q53GD3 710 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 MAP3K21Q5TCX8 1036 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 MSANTD2Q6P1R3 559 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 KBTBD6Q86V97 674 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 BCL7CQ8WUZ0 217 aaPredicted RBP13.36□□□□□ -0.27
VPS54-203ENST00000409558 CEP290O15078 2479 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 RNF103-CHMP3A0A140T963 221 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 FBP2O00757 339 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 CNPP09543 421 aaKnown RBP13.35□□□□□ -0.27
VPS54-203ENST00000409558 ATXN1LP0C7T5 689 aaKnown RBP13.35□□□□□ -0.27
VPS54-203ENST00000409558 WEE1P30291 646 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 GSTT1P30711 240 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 PRKAA2P54646 552 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 CDH15P55291 814 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 CAMK1DQ8IU85 385 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 CLHC1Q8NHS4 586 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 EEF1AKMT1Q8WVE0 214 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 CANT1Q8WVQ1 401 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 EGFL8Q99944 293 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 COQ10BQ9H8M1 238 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 VTI1BQ9UEU0 232 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 INPP4BO15327 924 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 CDK14O94921 469 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 CRTAMO95727 393 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 C1RP00736 705 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 KLKB1P03952 638 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 MBL2P11226 248 aaPredicted RBP13.35□□□□□ -0.27
VPS54-203ENST00000409558 ATF6P18850 670 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 SREBF2Q12772 1141 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 C6orf10Q5SRN2 563 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 FAM91A1Q658Y4 838 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 DPF3Q92784 378 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 SLC22A12Q96S37 553 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 CACNA2D2Q9NY47 1150 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 UBAP1Q9NZ09 502 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 ZNHIT2Q9UHR6 403 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 CROTQ9UKG9 612 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 PSMD13Q9UNM6 376 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 AP3B1O00203 1094 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 GRIA2P42262 883 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 TSTA3Q13630 321 aaPredicted RBP13.35□□□□□ -0.27
VPS54-203ENST00000409558 PIGGQ5H8A4 983 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 LCA5Q86VQ0 697 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 HERC6Q8IVU3 1022 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 PGAM4Q8N0Y7 254 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 NAT16Q8N8M0 369 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 FBXO22Q8NEZ5 403 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 MDGA1Q8NFP4 955 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 HMGCLL1Q8TB92 370 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 RNF38Q9H0F5 515 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 GSTO2Q9H4Y5 243 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 VPS45Q9NRW7 570 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 CLGNO14967 610 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 NRP2O60462 931 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 NBNO60934 754 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 HOXC8P31273 242 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 KRT80Q6KB66 452 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 FRA10AC1Q70Z53 315 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 LRRC8DQ7L1W4 858 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 UMODL1-AS1Q8N2C9 162 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 BBS5Q8N3I7 341 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 OR10Q1Q8NGQ4 319 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 GABPB2Q8TAK5 448 aaPredicted RBP13.35□□□□□ -0.27
VPS54-203ENST00000409558 LINGO1Q96FE5 620 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 SLC39A13Q96H72 371 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 LIN28AQ9H9Z2 209 aaKnown RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms