RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 UBA2Q9UBT2 640 aaPredicted RBP4.93□□□□□ -1.62
SMAD4-202ENST00000398417 MYRFQ9Y2G1 1151 aa4.93□□□□□ -1.62
SMAD4-202ENST00000398417 SEC16AO15027 2179 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 KLHL33A6NCF5 533 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 PLOD2O00469 737 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 INPP4BO15327 924 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 GJB3O75712 270 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 GSNP06396 782 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 FESP07332 822 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 PCNAP12004 261 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 IMPDH1P20839 514 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 NRG1Q02297 640 aaPredicted RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 PLCL1Q15111 1095 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 KCTD21Q4G0X4 260 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 ZNF678Q5SXM1 525 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 ARHGAP22Q7Z5H3 698 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 SPPL2BQ8TCT7 592 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 DLG3Q92796 817 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 RPL10LQ96L21 214 aaKnown RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 SLC25A51Q9H1U9 297 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 GPBP1L1Q9HC44 474 aaPredicted RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 H3BNX3 289 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 TNFAIP8O95379 198 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 JUNP05412 331 aaKnown RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 ASGR1P07306 291 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 PGFP49763 221 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 ATP6AP1LQ52LC2 224 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 SIRPB2Q5JXA9 342 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 FBXL22Q6P050 247 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 DENND1CQ8IV53 801 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 C2CD4AQ8NCU7 369 aaPredicted RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 TSPAN14Q8NG11 270 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 CANT1Q8WVQ1 401 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 THAP11Q96EK4 314 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 C6orf203Q9P0P8 240 aaPredicted RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 PKP3Q9Y446 797 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 AFDNP55196 1824 aaKnown RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 CCDC88AQ3V6T2 1871 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 CCDC162PA2VCL2 907 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 MYO1GB0I1T2 1018 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 HHLA1C9JL84 531 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 GABRDO14764 452 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 HAPLN1P10915 354 aaPredicted RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 FASP25445 335 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 SLC11A2P49281 568 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 GALK1P51570 392 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 LAMB3Q13751 1172 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 NEDD8Q15843 81 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 ACBD5Q5T8D3 534 aaPredicted RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 FBXL19Q6PCT2 694 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 KDELC1Q6UW63 502 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 ADGRG6Q86SQ4 1221 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 GALNT15Q8N3T1 639 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 ZC3H15Q8WU90 426 aaKnown RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 SDCCAG3Q96C92 435 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 CDK15Q96Q40 435 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 THUMPD3Q9BV44 507 aaKnown RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 GPR63Q9BZJ6 419 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 FAM192AQ9GZU8 254 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 FAM124BQ9H5Z6 455 aaPredicted RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 WWOXQ9NZC7 414 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 DNAJB4Q9UDY4 337 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 FCF1Q9Y324 198 aaKnown RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 VCANP13611 3396 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 RPL17P18621 184 aaKnown RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 TYMPP19971 482 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 RPL9P32969 192 aaKnown RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 ZNF135P52742 658 aaPredicted RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 USP46P62068 366 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 SLC2A7Q6PXP3 512 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 NAT16Q8N8M0 369 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 FAM47BQ8NA70 645 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 TXNDC5Q8NBS9 432 aaKnown RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 OR56A4Q8NGH8 313 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 BTBD9Q96Q07 612 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 SOX17Q9H6I2 414 aaPredicted RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 CATSPERZQ9NTU4 200 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 MARCH2Q9P0N8 246 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 H3BMM5 538 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 S1PR4O95977 384 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 HTR6P50406 440 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 MTTPP55157 894 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 LPIN1Q14693 890 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 PGS1Q32NB8 556 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 TIGD2Q4W5G0 525 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 DNAJC14Q6Y2X3 702 aaPredicted RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 B3GNT6Q6ZMB0 384 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 MILR1Q7Z6M3 343 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 DHRSXQ8N5I4 330 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 OR6K2Q8NGY2 324 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 B4GALNT2Q8NHY0 566 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 MAGEE2Q8TD90 523 aaPredicted RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 VPS33AQ96AX1 596 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 AKTIPQ9H8T0 292 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 TLR8Q9NR97 1041 aaKnown RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 ANAPC2Q9UJX6 822 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 GABRQQ9UN88 632 aa4.92□□□□□ -1.62
SMAD4-202ENST00000398417 POLR3HQ9Y535 204 aaPredicted RBP4.92□□□□□ -1.62
SMAD4-202ENST00000398417 NHSL1Q5SYE7 1610 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms