RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 SQSTM1Q13501 440 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 SNX1Q13596 522 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 NFATC4Q14934 902 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 FNBP1LQ5T0N5 605 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 IZUMO3Q5VZ72 239 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 ANO7Q6IWH7 933 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 OGFOD3Q6PK18 319 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 IL27RAQ6UWB1 636 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 KIAA0408Q6ZU52 694 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 LYSMD3Q7Z3D4 306 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 GLRX5Q86SX6 157 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 TSPAN33Q86UF1 283 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 CXorf40AQ8TE69 158 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 CAVIN3Q969G5 261 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 PKNOX2Q96KN3 472 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 EPB41L4BQ9H329 900 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 EURLQ9NYK6 297 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 CYP8B1Q9UNU6 501 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 C17orf113A0A1B0GUU1 675 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 PRR23AA6NEV1 266 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 FADS2P1A8MWK0 482 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 EIF3FO00303 357 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-202ENST00000394943 TM4SF5O14894 197 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 AURKAO14965 403 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 RNASEH2AO75792 299 aaKnown RBP6.98□□□□□ -1.29
LIMA1-202ENST00000394943 GIMD1P0DJR0 217 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 AKT2P31751 481 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 MAGEA12P43365 314 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 ITGA8P53708 1063 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 NHLH1Q02575 133 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 MSS51Q4VC12 460 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 LYSMD4Q5XG99 296 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 SEL1L3Q68CR1 1132 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 ZNF438Q7Z4V0 828 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 SNX20Q7Z614 316 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 C11orf96Q7Z7L8 435 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 PIP4P1Q86T03 277 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 FAM181AQ8N9Y4 354 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 BTN2A2Q8WVV5 523 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 INTS10Q9NVR2 710 aaKnown RBP6.98□□□□□ -1.29
LIMA1-202ENST00000394943 SMG5Q9UPR3 1016 aaKnown RBP6.98□□□□□ -1.29
LIMA1-202ENST00000394943 FAM159BA6NKW6 160 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 TPP1O14773 563 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 RECQL5O94762 991 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-202ENST00000394943 URI1O94763 535 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-202ENST00000394943 CLDN7O95471 211 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 CCDC38Q502W7 563 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 LDLRAP1Q5SW96 308 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 ZFYVE27Q5T4F4 411 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 SYCP2LQ5T4T6 812 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 LVRNQ6Q4G3 990 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 AFTPHQ6ULP2 937 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 CERS6Q6ZMG9 384 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 B4GALNT4Q76KP1 1039 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 PRUNE1Q86TP1 453 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 KLHDC8AQ8IYD2 350 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 LPCAT1Q8NF37 534 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 OR52K1Q8NGK4 314 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 GPBAR1Q8TDU6 330 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 FUBP1Q96AE4 644 aaKnown RBP6.98□□□□□ -1.29
LIMA1-202ENST00000394943 CEP41Q9BYV8 373 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 EPB41L5Q9HCM4 733 aa6.98□□□□□ -1.29
LIMA1-202ENST00000394943 ZFC3H1O60293 1989 aaKnown RBP6.98□□□□□ -1.29
LIMA1-202ENST00000394943 MYO18AQ92614 2054 aaKnown RBP6.98□□□□□ -1.29
LIMA1-202ENST00000394943 IGLON5A6NGN9 336 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 KPNA3O00505 521 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 CSF2P04141 144 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 ALPIP09923 528 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 NME1P15531 152 aaKnown RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 ACRV1P26436 265 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 GRIA1P42261 906 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 CHRNA4P43681 627 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 LEPRP48357 1165 aaKnown RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 CACNG1Q06432 222 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 EIF2B5Q13144 721 aaKnown RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 PTK2BQ14289 1009 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 FZD2Q14332 565 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 GALNT3Q14435 633 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 CLPPQ16740 277 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 TSSK4Q6SA08 328 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 FRMD1Q8N878 549 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 C2CD4AQ8NCU7 369 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 CDKN2AIPNLQ96HQ2 116 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 FCRL3Q96P31 734 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 TIMM29Q9BSF4 260 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 TRIM51Q9BSJ1 452 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 APOOQ9BUR5 198 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 TMEM109Q9BVC6 243 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 CARD6Q9BX69 1037 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 MBNL1Q9NR56 388 aaKnown RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 UTP11Q9Y3A2 253 aaKnown RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 C2orf81A6NN90 581 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 ELFN1P0C7U0 828 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 CA5AP35218 305 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 CDK3Q00526 305 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 B4GALNT1Q00973 533 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 ITGA9Q13797 1035 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 LRRC14Q15048 493 aa6.97□□□□□ -1.29
LIMA1-202ENST00000394943 KIAA1324Q6UXG2 1013 aaKnown RBP6.97□□□□□ -1.29
LIMA1-202ENST00000394943 TTC7BQ86TV6 843 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms