RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 DYTNA2CJ06 578 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 TIMM44O43615 452 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 TIPRLO75663 272 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 VNN2O95498 520 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 LTFP02788 710 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 MPOP05164 745 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 MYCLP1P12525 358 aaPredicted RBP11.13□□□□□ -0.63
CUX1-204ENST00000393824 GMPRP36959 345 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 LHX1P48742 406 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 NDUFV1P49821 464 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 DPYSL2Q16555 572 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 C15orf59Q2T9L4 293 aaPredicted RBP11.13□□□□□ -0.63
CUX1-204ENST00000393824 ARL13BQ3SXY8 428 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 RAB6CQ53S08 254 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 C6orf10Q5SRN2 563 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 C6orf183Q5T699 404 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 ARHGAP17Q68EM7 881 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 TRNP1Q6NT89 227 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 FAM171BQ6P995 826 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 CLEC20AQ6ZU45 233 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 CMC1Q7Z7K0 106 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 SCUBE3Q8IX30 993 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 CBR4Q8N4T8 237 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 DCLK2Q8N568 766 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 PCDH20Q8N6Y1 951 aaKnown RBP11.13□□□□□ -0.63
CUX1-204ENST00000393824 RAB2BQ8WUD1 216 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 MAELQ96JY0 434 aaKnown RBP11.13□□□□□ -0.63
CUX1-204ENST00000393824 NDEL1Q9GZM8 345 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 RAB6CQ9H0N0 254 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 NMRAL1Q9HBL8 299 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 CCM2LQ9NUG4 571 aaPredicted RBP11.13□□□□□ -0.63
CUX1-204ENST00000393824 PCDHB8Q9UN66 801 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 NOX1Q9Y5S8 564 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 GRAP2O75791 330 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 SOAT2O75908 522 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 SEC14L2O76054 403 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 OAZ2O95190 189 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 PIGNO95427 931 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 MATN1P21941 496 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 CYP2F1P24903 491 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 PCYT1AP49585 367 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 HLCSP50747 726 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 HNRNPFP52597 415 aaKnown RBP11.13□□□□□ -0.63
CUX1-204ENST00000393824 MLLT10P55197 1068 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 MAP3K7CLP57077 242 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 HTRA4P83105 476 aaPredicted RBP11.13□□□□□ -0.63
CUX1-204ENST00000393824 TNK2Q07912 1038 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 NME3Q13232 169 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 MRPL58Q14197 206 aaKnown RBP11.13□□□□□ -0.63
CUX1-204ENST00000393824 ARL13AQ5H913 290 aaPredicted RBP11.13□□□□□ -0.63
CUX1-204ENST00000393824 INTS6LQ5JSJ4 861 aaKnown RBP11.13□□□□□ -0.63
CUX1-204ENST00000393824 SPANXN3Q5MJ09 141 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 SPOUT1Q5T280 376 aaKnown RBP11.13□□□□□ -0.63
CUX1-204ENST00000393824 CASC4Q6P4E1 433 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 LINC00299Q6ZSB3 139 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 FAM183BPQ6ZVS7 135 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 RDH11Q8TC12 318 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 PPP1R36Q96LQ0 422 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 RBBP8Q99708 897 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 SMOQ99835 787 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 ACBD6Q9BR61 282 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 SNRNP25Q9BV90 132 aaKnown RBP11.13□□□□□ -0.63
CUX1-204ENST00000393824 IL22Q9GZX6 179 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 SPAG4Q9NPE6 437 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 ZDHHC2Q9UIJ5 367 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 IFT52Q9Y366 437 aa11.13□□□□□ -0.63
CUX1-204ENST00000393824 VCANP13611 3396 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 A0A0A0MRY4 1105 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 KCNU1A8MYU2 1149 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 CLDN25C9JDP6 229 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 APOA4P06727 396 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 ENDOUP21128 410 aaKnown RBP11.12□□□□□ -0.63
CUX1-204ENST00000393824 BDNFP23560 247 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 SDC4P31431 198 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 SPRP35270 261 aaPredicted RBP11.12□□□□□ -0.63
CUX1-204ENST00000393824 GPR15P49685 360 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 ZNF846Q147U1 533 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 SLC39A12Q504Y0 691 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 SDHAF4Q5VUM1 108 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 LIPMQ5VYY2 423 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 HEATR6Q6AI08 1181 aaKnown RBP11.12□□□□□ -0.63
CUX1-204ENST00000393824 NXNQ6DKJ4 435 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 FAM35AQ86V20 835 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 PIGZQ86VD9 579 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 ZDHHC17Q8IUH5 632 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 EPHX4Q8IUS5 362 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 SLC39A11Q8N1S5 342 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 ANKRD52Q8NB46 1076 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 ATAD1Q8NBU5 361 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 CANT1Q8WVQ1 401 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 HPS1Q92902 700 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 SH3YL1Q96HL8 342 aaPredicted RBP11.12□□□□□ -0.63
CUX1-204ENST00000393824 TNIP3Q96KP6 325 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 SPATA13Q96N96 652 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 MUC3BQ9H195 1237 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 EHD1Q9H4M9 534 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 RETREG1Q9H6L5 497 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 PARVBQ9HBI1 364 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 CACNA2D2Q9NY47 1150 aa11.12□□□□□ -0.63
CUX1-204ENST00000393824 TMEM181Q9P2C4 612 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms