RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 ILF3Q12906 894 aaKnown RBP eCLIP16.53■□□□□ 0.24
PTPRK-208ENST00000392449 TSR1Q2NL82 804 aaKnown RBP16.53■□□□□ 0.24
PTPRK-208ENST00000392449 TAF1BQ53T94 588 aaPredicted RBP16.53■□□□□ 0.24
PTPRK-208ENST00000392449 RALGPS1Q5JS13 557 aa16.53■□□□□ 0.24
PTPRK-208ENST00000392449 ZNF843Q8N446 348 aa16.53■□□□□ 0.24
PTPRK-208ENST00000392449 ARRDC2Q8TBH0 407 aa16.53■□□□□ 0.24
PTPRK-208ENST00000392449 AP2M1Q96CW1 435 aa16.53■□□□□ 0.24
PTPRK-208ENST00000392449 ZNF670Q9BS34 389 aa16.53■□□□□ 0.24
PTPRK-208ENST00000392449 TDRD1Q9BXT4 1180 aaKnown RBP16.53■□□□□ 0.24
PTPRK-208ENST00000392449 GSDMCQ9BYG8 508 aa16.53■□□□□ 0.24
PTPRK-208ENST00000392449 SEMA4CQ9C0C4 833 aa16.53■□□□□ 0.24
PTPRK-208ENST00000392449 SLC17A4Q9Y2C5 497 aa16.53■□□□□ 0.24
PTPRK-208ENST00000392449 PCYT1BQ9Y5K3 369 aaPredicted RBP16.53■□□□□ 0.24
PTPRK-208ENST00000392449 A0A0J9YYE9 177 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 TK2O00142 265 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 MATN3O15232 486 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 INPP4BO15327 924 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 NUDT21O43809 227 aaKnown RBP16.52■□□□□ 0.23
PTPRK-208ENST00000392449 PRLP01236 227 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 TRBC1P01850 177 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 JMJD7P0C870 316 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 KRT10P13645 584 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 ALDH4A1P30038 563 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 EPHB1P54762 984 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 ZFP36L1Q07352 338 aaKnown RBP16.52■□□□□ 0.23
PTPRK-208ENST00000392449 C19orf57Q0VDD7 668 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 LY6DQ14210 128 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 MAP9Q49MG5 647 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 PHF19Q5T6S3 580 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 ALG1LQ6GMV1 187 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 USP53Q70EK8 1073 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 SLITRK4Q8IW52 837 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 LPCAT1Q8NF37 534 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 KIAA1524Q8TCG1 905 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 RAPGEF5Q92565 580 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 TMEM74Q96NL1 305 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 NUDT22Q9BRQ3 303 aa16.52■□□□□ 0.23
PTPRK-208ENST00000392449 ZFC3H1O60293 1989 aaKnown RBP16.52■□□□□ 0.23
PTPRK-208ENST00000392449 AHCTF1Q8WYP5 2266 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 PRAMEF33A0A0G2JMD5 474 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 ERVH48-1M5A8F1 160 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 HAX1O00165 279 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 KCNK1O00180 336 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 EFSO43281 561 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 PRAMEF10O60809 474 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 ZIC2O95409 532 aaPredicted RBP16.51■□□□□ 0.23
PTPRK-208ENST00000392449 CLDN7O95471 211 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 PNLIPP16233 465 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 NFKBIAP25963 317 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 HNRNPH3P31942 346 aaKnown RBP16.51■□□□□ 0.23
PTPRK-208ENST00000392449 DPTQ07507 201 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 MESDQ14696 234 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 C16orf72Q14CZ0 275 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 IFI16Q16666 785 aaKnown RBP16.51■□□□□ 0.23
PTPRK-208ENST00000392449 ZFYVE27Q5T4F4 411 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 C17orf82Q86X59 251 aaPredicted RBP16.51■□□□□ 0.23
PTPRK-208ENST00000392449 LRRC49Q8IUZ0 686 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 NAGSQ8N159 534 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 RCBTB1Q8NDN9 531 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 CTNNBL1Q8WYA6 563 aaPredicted RBP16.51■□□□□ 0.23
PTPRK-208ENST00000392449 FAF2Q96CS3 445 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 IQCDQ96DY2 449 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 RIOK2Q9BVS4 552 aaKnown RBP16.51■□□□□ 0.23
PTPRK-208ENST00000392449 TRNAU1APQ9NX07 287 aaKnown RBP16.51■□□□□ 0.23
PTPRK-208ENST00000392449 DTLQ9NZJ0 730 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.51■□□□□ 0.23
PTPRK-208ENST00000392449 FOXJ2Q9P0K8 574 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 PRKAB1Q9Y478 270 aa16.51■□□□□ 0.23
PTPRK-208ENST00000392449 HELZ2Q9BYK8 2649 aaKnown RBP16.51■□□□□ 0.23
PTPRK-208ENST00000392449 TRBV23OR9-2A0A075B6M9 112 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 CAPN8A6NHC0 703 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 RHPN2P1A8MT19 583 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 K7ENP7 123 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 IVLP07476 585 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 H2AFZP0C0S5 128 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 CCNCP24863 283 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 ACTR1BP42025 376 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 MLLT3P42568 568 aaPredicted RBP16.5■□□□□ 0.23
PTPRK-208ENST00000392449 STC1P52823 247 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 MAPK10P53779 464 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 ACTR1AP61163 376 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 EIF3IQ13347 325 aaKnown RBP16.5■□□□□ 0.23
PTPRK-208ENST00000392449 PDK2Q15119 407 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 SLC18A3Q16572 532 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 ASTE1Q2TB18 679 aaPredicted RBP16.5■□□□□ 0.23
PTPRK-208ENST00000392449 NKAIN2Q5VXU1 208 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 TIGD7Q6NT04 549 aaPredicted RBP16.5■□□□□ 0.23
PTPRK-208ENST00000392449 INO80CQ6PI98 192 aaPredicted RBP16.5■□□□□ 0.23
PTPRK-208ENST00000392449 ADAMTSL4Q6UY14 1074 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 ZNF574Q6ZN55 896 aaPredicted RBP16.5■□□□□ 0.23
PTPRK-208ENST00000392449 CCDC81Q6ZN84 652 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 H2AFVQ71UI9 128 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 B4GALNT4Q76KP1 1039 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 ZNF761Q86XN6 746 aaPredicted RBP16.5■□□□□ 0.23
PTPRK-208ENST00000392449 CCNYQ8ND76 341 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 TTC9Q92623 222 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 CCDC97Q96F63 343 aaPredicted RBP16.5■□□□□ 0.23
PTPRK-208ENST00000392449 TSGA13Q96PP4 275 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 CEP41Q9BYV8 373 aa16.5■□□□□ 0.23
PTPRK-208ENST00000392449 BRD8Q9H0E9 1235 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms