RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SLC34A3Q8N130 599 aa12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 OR52K2Q8NGK3 314 aa12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 AKT1S1Q96B36 256 aa12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 LRRC19Q9H756 370 aa12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 CRYBB1P53674 252 aaPredicted RBP12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 C9orf64Q5T6V5 341 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 AAGABQ6PD74 315 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 FBXL16Q8N461 479 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 MCMBPQ9BTE3 642 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 SMURF2Q9HAU4 748 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 SEC14L3Q9UDX4 400 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 SNX7Q9UNH6 387 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 DMTF1Q9Y222 760 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 NPEPPSL1A6NEC2 478 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 APOC1P02654 83 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 MATKP42679 507 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 NDUFV1P49821 464 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 STXBP1P61764 594 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 ENPEPQ07075 957 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 SF1Q15637 639 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 CCNYL2Q5T2Q4 361 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 PLPPR4Q7Z2D5 763 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 CCDC54Q8NEL0 328 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 LCA5LO95447 670 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 CRTC3Q6UUV7 619 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 C1orf186Q6ZWK4 172 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 ADGRA1Q86SQ6 560 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 TOP6BLQ8N6T0 577 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 OR2L5Q8NG80 312 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 KCTD5Q9NXV2 234 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 GULP1Q9UBP9 304 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 ZNF490Q9ULM2 529 aaPredicted RBP12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 TBC1D3DA0A087WVF3 549 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 TBC1D3IA0A087WXS9 549 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 TBC1D3EA0A087X179 549 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 TBC1D3KA0A087X1G2 549 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 TBC1D3FA6NER0 549 aaPredicted RBP12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 TBC1D3LB9A6J9 549 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 TBC1D3HP0C7X1 549 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 DLG4P78352 724 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 MRPS5P82675 430 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 CDK18Q07002 472 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 TBC1D3GQ6DHY5 549 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 TBC1D3CQ6IPX1 549 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 RBM44Q6ZP01 1051 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 YTHDF3Q7Z739 585 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 FAM71AQ8IYT1 594 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 TBC1D3Q8IZP1 549 aaPredicted RBP12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 TRMOQ9BU70 441 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 IMP3Q9NV31 184 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 GNEQ9Y223 722 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 DERAQ9Y315 318 aa12.77□□□□□ -0.37
CCDC88C-204ENST00000389857 WNT10BO00744 389 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 MATN4O95460 622 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 SAGP10523 405 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 TSPAN8P19075 237 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 PRKCIP41743 596 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 GTF2BQ00403 316 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 ITGB3BPQ13352 177 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 SNAP47Q5SQN1 464 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 PIK3R3Q92569 461 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 RIT1Q92963 219 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 HDAC10Q969S8 669 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 CST11Q9H112 138 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 SNX3O60493 162 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 MAFO75444 373 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 GLRA2P23416 452 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 TNFAIP8L3Q5GJ75 292 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 FKBP1CQ5VVH2 108 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 SCIMPQ6UWF3 145 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 ADCY4Q8NFM4 1077 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 RCN3Q96D15 328 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 RBM4BQ9BQ04 359 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 RBM4Q9BWF3 364 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 DUSP16Q9BY84 665 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 BRINP2Q9C0B6 783 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 PCDHGA3Q9Y5H0 932 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 OR6C75A6NL08 312 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 SRRM3A6NNA2 597 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 ADM5C9JUS6 153 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 EML1O00423 815 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 FPGTO14772 594 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 DDNO94850 711 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 SHBGP04278 402 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 ZNF155Q12901 538 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 PLA2G4EQ3MJ16 856 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 PHPT1Q9NRX4 125 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 USP20Q9Y2K6 914 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 RIIAD1A6NNX1 92 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 NEDD8-MDP1E9PL57 170 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 CBFA2T3O75081 653 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 ZNF432O94892 652 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 PDHA2P29803 388 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 MTHFRP42898 656 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 CTSKP43235 329 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 DNASE1L1P49184 302 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 ZNF132P52740 706 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 ZNF697Q5TEC3 545 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 FUKQ8N0W3 1084 aa12.76□□□□□ -0.37
CCDC88C-204ENST00000389857 LENG1Q96BZ8 264 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 110.3 ms