RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TNKS2Q9H2K2 1166 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 LRRC40Q9H9A6 602 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 CASS4Q9NQ75 786 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 PCMTD2Q9NV79 361 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 BFARQ9NZS9 450 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 RPS6KL1Q9Y6S9 549 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 WASF2Q9Y6W5 498 aa10.21□□□□□ -0.77
VPS53-202ENST00000389040 INSIG1O15503 277 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 LEFTY1O75610 366 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 CD6P30203 668 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 ALDH3A1P30838 453 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 NUDT1P36639 197 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 RPL26P61254 145 aaKnown RBP10.21□□□□□ -0.78
VPS53-202ENST00000389040 BNIP1Q12981 228 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 PDAP1Q13442 181 aaKnown RBP10.21□□□□□ -0.78
VPS53-202ENST00000389040 PRPSAP1Q14558 356 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 MAP7D1Q3KQU3 841 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 ARSIQ5FYB1 569 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 NDUFAF2Q8N183 169 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 RYBPQ8N488 228 aaPredicted RBP10.21□□□□□ -0.78
VPS53-202ENST00000389040 DNAAF3Q8N9W5 541 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 C10orf82Q8WW14 230 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 TSSK1BQ9BXA7 367 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 SLC13A1Q9BZW2 595 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 TM6SF2Q9BZW4 377 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 SLC25A51Q9H1U9 297 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 SUV39H2Q9H5I1 410 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 SLC40A1Q9NP59 571 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 VPS45Q9NRW7 570 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 ZFATQ9P243 1243 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 SLC17A6Q9P2U8 582 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 RPL26L1Q9UNX3 145 aaKnown RBP10.21□□□□□ -0.78
VPS53-202ENST00000389040 CHD5Q8TDI0 1954 aa10.21□□□□□ -0.78
VPS53-202ENST00000389040 MIA3Q5JRA6 1907 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 TSPAN11A1L157 253 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 KLF11O14901 512 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 AP1G1O43747 822 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 RPP40O75818 363 aaKnown RBP10.2□□□□□ -0.78
VPS53-202ENST00000389040 RASSF9O75901 435 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 SERPINF2P08697 491 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 TROVE2P10155 538 aaKnown RBP eCLIP10.2□□□□□ -0.78
VPS53-202ENST00000389040 NEFHP12036 1026 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 BGNP21810 368 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 CRHR1P34998 444 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 FNTBP49356 437 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 SCNN1BP51168 640 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 BCL2L1Q07817 233 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 FRG1Q14331 258 aaKnown RBP10.2□□□□□ -0.78
VPS53-202ENST00000389040 SETDB1Q15047 1291 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 NCEH1Q6PIU2 408 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 CES3Q6UWW8 571 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 KIAA1324Q6UXG2 1013 aaKnown RBP10.2□□□□□ -0.78
VPS53-202ENST00000389040 TMEM135Q86UB9 458 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 ZNF398Q8TD17 642 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 ACMSDQ8TDX5 336 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 FOXJ1Q92949 421 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 ECHDC3Q96DC8 303 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 CERS2Q96G23 380 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 LOXL4Q96JB6 756 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 FCRL3Q96P31 734 aaPredicted RBP10.2□□□□□ -0.78
VPS53-202ENST00000389040 BTBD1Q9H0C5 482 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 NPHS2Q9NP85 383 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 SCUBE2Q9NQ36 999 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 FBXL12Q9NXK8 326 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 WSB2Q9NYS7 404 aaPredicted RBP10.2□□□□□ -0.78
VPS53-202ENST00000389040 ACTL7AQ9Y615 435 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 SHROOM3Q8TF72 1996 aa10.2□□□□□ -0.78
VPS53-202ENST00000389040 MUC22E2RYF6 1773 aaPredicted RBP10.2□□□□□ -0.78
VPS53-202ENST00000389040 MAGEB16A2A368 324 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 LRRC72A6NJI9 287 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 KPNA3O00505 521 aaPredicted RBP10.19□□□□□ -0.78
VPS53-202ENST00000389040 HGSO14964 777 aaPredicted RBP10.19□□□□□ -0.78
VPS53-202ENST00000389040 MID1O15344 667 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 PSMD3O43242 534 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 HTRA2O43464 458 aaPredicted RBP10.19□□□□□ -0.78
VPS53-202ENST00000389040 BNIP3LO60238 219 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 DCTN3O75935 186 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 USP1O94782 785 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 RHOBTB1O94844 696 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 EPOP01588 193 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 CTSLP07711 333 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 ITGA2BP08514 1039 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 ERVK-10P10266 1014 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 PSMD8P48556 350 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 NPY2RP49146 381 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 NCALDP61601 193 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 TCF15Q12870 199 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 NAPEPLDQ6IQ20 393 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 TSSK4Q6SA08 328 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 ERN2Q76MJ5 926 aaKnown RBP10.19□□□□□ -0.78
VPS53-202ENST00000389040 TRIM42Q8IWZ5 723 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 KLHDC8BQ8IXV7 354 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 RAVER1Q8IY67 606 aaKnown RBP10.19□□□□□ -0.78
VPS53-202ENST00000389040 HDDC3Q8N4P3 179 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 CNTD1Q8N815 330 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.19□□□□□ -0.78
VPS53-202ENST00000389040 CHST14Q8NCH0 376 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 ARMC2Q8NEN0 867 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 ZNF669Q96BR6 464 aaPredicted RBP10.19□□□□□ -0.78
VPS53-202ENST00000389040 LRRC37BQ96QE4 947 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms