RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 IL26Q9NPH9 171 aa26.75■■□□□ 1.87
MSX1-201ENST00000382723 TCF20Q9UGU0 1960 aaKnown RBP26.75■■□□□ 1.87
MSX1-201ENST00000382723 SYNCRIPO60506 623 aaKnown RBP26.75■■□□□ 1.87
MSX1-201ENST00000382723 C1SP09871 688 aa26.75■■□□□ 1.87
MSX1-201ENST00000382723 STC1P52823 247 aa26.75■■□□□ 1.87
MSX1-201ENST00000382723 PGGT1BP53609 377 aa26.75■■□□□ 1.87
MSX1-201ENST00000382723 TDGQ13569 410 aa26.75■■□□□ 1.87
MSX1-201ENST00000382723 USP10Q14694 798 aaKnown RBP26.75■■□□□ 1.87
MSX1-201ENST00000382723 ERAP2Q6P179 960 aa26.75■■□□□ 1.87
MSX1-201ENST00000382723 FBXL19Q6PCT2 694 aa26.75■■□□□ 1.87
MSX1-201ENST00000382723 RFLNAQ6ZTI6 216 aa26.75■■□□□ 1.87
MSX1-201ENST00000382723 TAS2R42Q7RTR8 314 aa26.75■■□□□ 1.87
MSX1-201ENST00000382723 SGSM3Q96HU1 749 aa26.75■■□□□ 1.87
MSX1-201ENST00000382723 PRDM6Q9NQX0 595 aa26.75■■□□□ 1.87
MSX1-201ENST00000382723 DYRK4Q9NR20 520 aa26.75■■□□□ 1.87
MSX1-201ENST00000382723 ITM2BQ9Y287 266 aa26.75■■□□□ 1.87
MSX1-201ENST00000382723 COL4A2P08572 1712 aa26.74■■□□□ 1.87
MSX1-201ENST00000382723 C1QTNF3-AMACRE9PGA6 284 aa26.74■■□□□ 1.87
MSX1-201ENST00000382723 PRAMEF1O95521 474 aa26.74■■□□□ 1.87
MSX1-201ENST00000382723 DRD1P21728 446 aa26.74■■□□□ 1.87
MSX1-201ENST00000382723 CCNFP41002 786 aa26.74■■□□□ 1.87
MSX1-201ENST00000382723 PDE1CQ14123 709 aaPredicted RBP26.74■■□□□ 1.87
MSX1-201ENST00000382723 RBM20Q5T481 1227 aaKnown RBP26.74■■□□□ 1.87
MSX1-201ENST00000382723 GALNT7Q86SF2 657 aa26.74■■□□□ 1.87
MSX1-201ENST00000382723 GPR26Q8NDV2 337 aa26.74■■□□□ 1.87
MSX1-201ENST00000382723 VPS11Q9H270 941 aa26.74■■□□□ 1.87
MSX1-201ENST00000382723 FAM50BQ9Y247 325 aa26.74■■□□□ 1.87
MSX1-201ENST00000382723 SRP72O76094 671 aaKnown RBP26.73■■□□□ 1.87
MSX1-201ENST00000382723 TOP3BO95985 862 aaKnown RBP26.73■■□□□ 1.87
MSX1-201ENST00000382723 GMPRP36959 345 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 SPAM1P38567 509 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 CACNG1Q06432 222 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 TYSND1Q2T9J0 566 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 CNPY4Q8N129 248 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 TCP10LQ8TDR4 215 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 GLYATL1P3A0A0U1RQE8 302 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 GAPDHSO14556 408 aaPredicted RBP26.73■■□□□ 1.87
MSX1-201ENST00000382723 SRFP11831 508 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 CD72P21854 359 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 NTSR1P30989 418 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 GNGT1P63211 74 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 CAMK2GQ13555 558 aaPredicted RBP26.73■■□□□ 1.87
MSX1-201ENST00000382723 SDE2Q6IQ49 451 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 CDHR3Q6ZTQ4 885 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 DPPA4Q7L190 304 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 IL17RCQ8NAC3 791 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 ACMSDQ8TDX5 336 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 ISL2Q96A47 359 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 PAIP2Q9BPZ3 127 aaKnown RBP26.73■■□□□ 1.87
MSX1-201ENST00000382723 IQCGQ9H095 443 aaKnown RBP26.73■■□□□ 1.87
MSX1-201ENST00000382723 APPL1Q9UKG1 709 aa26.73■■□□□ 1.87
MSX1-201ENST00000382723 UBA6A0AVT1 1052 aaPredicted RBP26.72■■□□□ 1.87
MSX1-201ENST00000382723 NDUFS3O75489 264 aa26.72■■□□□ 1.87
MSX1-201ENST00000382723 KLF8O95600 359 aaPredicted RBP26.72■■□□□ 1.87
MSX1-201ENST00000382723 ZNF30P17039 623 aa26.72■■□□□ 1.87
MSX1-201ENST00000382723 MMP12P39900 470 aa26.72■■□□□ 1.87
MSX1-201ENST00000382723 CLCN5P51795 746 aa26.72■■□□□ 1.87
MSX1-201ENST00000382723 SLC44A4Q53GD3 710 aa26.72■■□□□ 1.87
MSX1-201ENST00000382723 RAPH1Q70E73 1250 aa26.72■■□□□ 1.87
MSX1-201ENST00000382723 TAX1BP1Q86VP1 789 aa26.72■■□□□ 1.87
MSX1-201ENST00000382723 CBARPQ8N350 705 aaPredicted RBP26.72■■□□□ 1.87
MSX1-201ENST00000382723 GDAP1Q8TB36 358 aa26.72■■□□□ 1.87
MSX1-201ENST00000382723 OMDQ99983 421 aa26.72■■□□□ 1.87
MSX1-201ENST00000382723 C19orf43Q9BQ61 176 aa26.72■■□□□ 1.87
MSX1-201ENST00000382723 ASB8Q9H765 288 aa26.72■■□□□ 1.87
MSX1-201ENST00000382723 SLC17A7Q9P2U7 560 aa26.72■■□□□ 1.87
MSX1-201ENST00000382723 CD84Q9UIB8 345 aa26.72■■□□□ 1.87
MSX1-201ENST00000382723 PHGDHO43175 533 aaKnown RBP26.71■■□□□ 1.87
MSX1-201ENST00000382723 MAGEA12P43365 314 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 NEK3P51956 506 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 RALGDSQ12967 914 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 CHRNA6Q15825 494 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 SEPT7Q16181 437 aaKnown RBP26.71■■□□□ 1.87
MSX1-201ENST00000382723 HSD11B1LQ7Z5J1 315 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 DENND1AQ8TEH3 1009 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 INTS10Q9NVR2 710 aaKnown RBP26.71■■□□□ 1.87
MSX1-201ENST00000382723 A0A096LPK6 155 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 RNASEH1O60930 286 aaKnown RBP26.71■■□□□ 1.87
MSX1-201ENST00000382723 ZWINTO95229 277 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 ADRB3P13945 408 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 SPINT3P49223 89 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 SATB1Q01826 763 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 ZNF460Q14592 562 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 PUS10Q3MIT2 529 aaKnown RBP26.71■■□□□ 1.87
MSX1-201ENST00000382723 FAM46CQ5VWP2 391 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 KIAA1211LQ6NV74 962 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 TXNDC5Q8NBS9 432 aaKnown RBP26.71■■□□□ 1.87
MSX1-201ENST00000382723 DYDC1Q8WWB3 177 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 FAM3CQ92520 227 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 TCF12Q99081 682 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 WRAP53Q9BUR4 548 aaKnown RBP26.71■■□□□ 1.87
MSX1-201ENST00000382723 RSPH9Q9H1X1 276 aaPredicted RBP26.71■■□□□ 1.87
MSX1-201ENST00000382723 SLC2A4RGQ9NR83 387 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 PKD2L2Q9NZM6 624 aa26.71■■□□□ 1.87
MSX1-201ENST00000382723 LOC730098B7Z3J9 87 aa26.7■■□□□ 1.86
MSX1-201ENST00000382723 GLULP15104 373 aa26.7■■□□□ 1.86
MSX1-201ENST00000382723 UGT1A6P19224 532 aa26.7■■□□□ 1.86
MSX1-201ENST00000382723 UGT1A1P22309 533 aa26.7■■□□□ 1.86
MSX1-201ENST00000382723 UGT1A4P22310 534 aa26.7■■□□□ 1.86
MSX1-201ENST00000382723 UGT1A3P35503 534 aa26.7■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms