RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 DPY19L3Q6ZPD9 716 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 ZNF550Q7Z398 422 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 DCAF4Q8WV16 495 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 PHF21BQ96EK2 531 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 CPNE2Q96FN4 548 aaPredicted RBP8.73□□□□□ -1.01
LIG3-202ENST00000378526 MED8Q96G25 268 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 ZNF419Q96HQ0 510 aaPredicted RBP8.73□□□□□ -1.01
LIG3-202ENST00000378526 NT5C1AQ9BXI3 368 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 NEURL1BA8MQ27 555 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 DCLK1O15075 740 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 ITGB6P18564 788 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 MAN2A2P49641 1150 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 CLK3P49761 638 aaKnown RBP8.73□□□□□ -1.01
LIG3-202ENST00000378526 RAB7AP51149 207 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 CAPZA1P52907 286 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 ERVK-8P63133 956 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 ANXA8L1Q5VT79 327 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 FRRS1Q6ZNA5 592 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 DDX53Q86TM3 631 aaKnown RBP8.73□□□□□ -1.01
LIG3-202ENST00000378526 CAND1Q86VP6 1230 aaKnown RBP8.73□□□□□ -1.01
LIG3-202ENST00000378526 SPATA2LQ8IUW3 424 aaPredicted RBP8.73□□□□□ -1.01
LIG3-202ENST00000378526 CHST4Q8NCG5 386 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 BEST4Q8NFU0 473 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 CCDC3Q9BQI4 270 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 ACTR10Q9NZ32 417 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 PTBP2Q9UKA9 531 aaKnown RBP8.73□□□□□ -1.01
LIG3-202ENST00000378526 MYOM2P54296 1465 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 PRXQ9BXM0 1461 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 LOC100509620A0A075B734 347 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 GRID2O43424 1007 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 C8BP07358 591 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 LINGO3P0C6S8 592 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 EIF4BP23588 611 aaKnown RBP8.73□□□□□ -1.01
LIG3-202ENST00000378526 ADD2P35612 726 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 ETFBP38117 255 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 ASMTP46597 345 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 RPS9P46781 194 aaKnown RBP8.73□□□□□ -1.01
LIG3-202ENST00000378526 TXNL4AP83876 142 aaKnown RBP8.73□□□□□ -1.01
LIG3-202ENST00000378526 DPYDQ12882 1025 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 NCOA4Q13772 614 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 SMTNL2Q2TAL5 461 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 LSM12Q3MHD2 195 aaKnown RBP8.73□□□□□ -1.01
LIG3-202ENST00000378526 SERPINA13PQ6UXR4 307 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 DPP9Q86TI2 863 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 SCP2D1Q9UJQ7 156 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 NAGPAQ9UK23 515 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 RIIAD1A6NNX1 92 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 DFNA5O60443 496 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 FARS2O95363 451 aaKnown RBP8.73□□□□□ -1.01
LIG3-202ENST00000378526 KLRC1P26715 233 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 UGT2B10P36537 528 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 SLC1A2P43004 574 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 PDX1P52945 283 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 PSMA6P60900 246 aaKnown RBP8.73□□□□□ -1.01
LIG3-202ENST00000378526 SLC25A3Q00325 362 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 TRIM28Q13263 835 aaKnown RBP8.73□□□□□ -1.01
LIG3-202ENST00000378526 PCK2Q16822 640 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 FIGNQ5HY92 759 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 NOMO2Q5JPE7 1267 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 IDNKQ5T6J7 187 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 HLA-DQA1Q5Y7H0 255 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 ZNF720Q7Z2F6 126 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 MED30Q96HR3 178 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 BIRC8Q96P09 236 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 ZNF518BQ9C0D4 1074 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 FOLH1BQ9HBA9 442 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 PCDHGA8Q9Y5G5 932 aa8.73□□□□□ -1.01
LIG3-202ENST00000378526 ZNF705GA8MUZ8 300 aaPredicted RBP8.72□□□□□ -1.01
LIG3-202ENST00000378526 MOCS2O96007 188 aaPredicted RBP8.72□□□□□ -1.01
LIG3-202ENST00000378526 CYP4B1P13584 511 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 TIGD6Q17RP2 521 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 TPRG1LQ5T0D9 272 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 SYT12Q8IV01 421 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 SVBPQ8N300 66 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 FNDC8Q8TC99 324 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 POMKQ9H5K3 350 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 PLEKHA1Q9HB21 404 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 CNOT11Q9UKZ1 510 aaKnown RBP8.72□□□□□ -1.01
LIG3-202ENST00000378526 ASTN2O75129 1339 aaPredicted RBP8.72□□□□□ -1.01
LIG3-202ENST00000378526 DNAJB5O75953 348 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 SCAF4O95104 1147 aaKnown RBP8.72□□□□□ -1.01
LIG3-202ENST00000378526 MAGEB1P43366 347 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 IDH3GP51553 393 aaPredicted RBP8.72□□□□□ -1.01
LIG3-202ENST00000378526 C14orf28Q4W4Y0 310 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 OGFOD2Q6N063 350 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 ZNF790Q6PG37 636 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 AHSA2Q719I0 299 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 SEPT12Q8IYM1 358 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 ZNF594Q96JF6 807 aaPredicted RBP8.72□□□□□ -1.01
LIG3-202ENST00000378526 NECAB3Q96P71 396 aaPredicted RBP8.72□□□□□ -1.01
LIG3-202ENST00000378526 SULT4A1Q9BR01 284 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 TMEM246Q9BRR3 403 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 USP29Q9HBJ7 922 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 ZNF223Q9UK11 482 aaPredicted RBP8.72□□□□□ -1.01
LIG3-202ENST00000378526 ERI2A8K979 691 aaKnown RBP8.72□□□□□ -1.01
LIG3-202ENST00000378526 GLI1P08151 1106 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 GIMD1P0DJR0 217 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 PRKAR1BP31321 381 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 ALDH3B1P43353 468 aa8.72□□□□□ -1.01
LIG3-202ENST00000378526 MAP4K2Q12851 820 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms