RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 EDDM13A0A1B0GTR0 161 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 HRGP04196 525 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 PTPN3P26045 913 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 AOAHP28039 575 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 CDKN1BP46527 198 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 POLE2P56282 527 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 SF1Q15637 639 aaKnown RBP9.03□□□□□ -0.96
UBR4-201ENST00000375218 RBM43Q6ZSC3 357 aaKnown RBP9.03□□□□□ -0.96
UBR4-201ENST00000375218 PRSS58Q8IYP2 241 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 TNFRSF14Q92956 283 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 APOPT1Q96IL0 206 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 ZBED3Q96IU2 234 aaPredicted RBP9.03□□□□□ -0.96
UBR4-201ENST00000375218 SAV1Q9H4B6 383 aaPredicted RBP9.03□□□□□ -0.96
UBR4-201ENST00000375218 TRPC7Q9HCX4 862 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 LAMA1P25391 3075 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 ZNFX1Q9P2E3 1918 aaKnown RBP9.03□□□□□ -0.96
UBR4-201ENST00000375218 FAM237AA0A1B0GTK4 181 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 FUOMA2VDF0 154 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 PRSS44E7EML9 344 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 IL1BP01584 269 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 PCSK2P16519 638 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 CCR10P46092 362 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 SLC9A3P48764 834 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 PIGHQ14442 188 aaPredicted RBP9.03□□□□□ -0.96
UBR4-201ENST00000375218 LARS2Q15031 903 aaKnown RBP9.03□□□□□ -0.96
UBR4-201ENST00000375218 DPY19L2P1Q6NXN4 242 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 CES3Q6UWW8 571 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 SH2D3CQ8N5H7 860 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 SLC5A5Q92911 643 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 C1QTNF3Q9BXJ4 246 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 VCX2Q9H322 139 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 SETD4Q9NVD3 440 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 GRHL1Q9NZI5 618 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 TMPRSS11EQ9UL52 423 aa9.03□□□□□ -0.96
UBR4-201ENST00000375218 TMEM229AB2RXF0 380 aa9.02□□□□□ -0.96
UBR4-201ENST00000375218 ZSCAN12O43309 604 aa9.02□□□□□ -0.96
UBR4-201ENST00000375218 POLR2CP19387 275 aaPredicted RBP9.02□□□□□ -0.96
UBR4-201ENST00000375218 DGKEP52429 567 aa9.02□□□□□ -0.96
UBR4-201ENST00000375218 EIF3BP55884 814 aaKnown RBP9.02□□□□□ -0.96
UBR4-201ENST00000375218 PPP2R2BQ00005 443 aa9.02□□□□□ -0.96
UBR4-201ENST00000375218 GALK2Q01415 458 aa9.02□□□□□ -0.96
UBR4-201ENST00000375218 DYRK1AQ13627 763 aa9.02□□□□□ -0.96
UBR4-201ENST00000375218 FLAD1Q8NFF5 587 aa9.02□□□□□ -0.96
UBR4-201ENST00000375218 ADAMTS16Q8TE57 1224 aa9.02□□□□□ -0.96
UBR4-201ENST00000375218 DNMT3LQ9UJW3 386 aa9.02□□□□□ -0.96
UBR4-201ENST00000375218 H7C0C1 242 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 CALB1P05937 261 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 TUBBP07437 444 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 PABPC1P11940 636 aaKnown RBP9.02□□□□□ -0.97
UBR4-201ENST00000375218 CCDC130P13994 396 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 ITGALP20701 1170 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 CPN2P22792 545 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 CMA1P23946 247 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 ACTR3P61158 418 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 EPHA7Q15375 998 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 PYROXD2Q8N2H3 581 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 RNF152Q8N8N0 203 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 RTL3Q8N8U3 475 aaKnown RBP9.02□□□□□ -0.97
UBR4-201ENST00000375218 CNBD1Q8NA66 436 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 BEST2Q8NFU1 509 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 PIGKQ92643 395 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 OPN3Q9H1Y3 402 aaPredicted RBP9.02□□□□□ -0.97
UBR4-201ENST00000375218 CUEDC2Q9H467 287 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 RMND5AQ9H871 391 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 ABCB8Q9NUT2 735 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 FAM120CQ9NX05 1096 aaKnown RBP9.02□□□□□ -0.97
UBR4-201ENST00000375218 TUBD1Q9UJT1 453 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 SMG5Q9UPR3 1016 aaKnown RBP9.02□□□□□ -0.97
UBR4-201ENST00000375218 DNAJC16Q9Y2G8 782 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 SPARCP09486 303 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 MDH1P40925 334 aaKnown RBP9.02□□□□□ -0.97
UBR4-201ENST00000375218 GCGRP47871 477 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 RAP1GDS1P52306 607 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 CDK18Q07002 472 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 ZSCAN23Q3MJ62 389 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 PATL1Q86TB9 770 aaKnown RBP9.02□□□□□ -0.97
UBR4-201ENST00000375218 SCUBE1Q8IWY4 988 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 ZNF781Q8N8C0 355 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 SRFBP1Q8NEF9 429 aaKnown RBP9.02□□□□□ -0.97
UBR4-201ENST00000375218 MMP19Q99542 508 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 CHID1Q9BWS9 393 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 PRDM13Q9H4Q3 707 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 NOL11Q9H8H0 719 aaKnown RBP9.02□□□□□ -0.97
UBR4-201ENST00000375218 PCMTD2Q9NV79 361 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 ZNF229Q9UJW7 825 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 GGA1Q9UJY5 639 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 ARGFXA6NJG6 315 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 TMEM210A6NLX4 147 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 A8MXE2 369 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 LINC01387J3KSC0 135 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 BIRC5O15392 142 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 TRIM3O75382 744 aaPredicted RBP9.02□□□□□ -0.97
UBR4-201ENST00000375218 EIF2AK2P19525 551 aaKnown RBP9.02□□□□□ -0.97
UBR4-201ENST00000375218 IFFO1Q0D2I5 559 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 SRSF5Q13243 272 aaKnown RBP9.02□□□□□ -0.97
UBR4-201ENST00000375218 NAB1Q13506 487 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 OR6B2Q6IFH4 312 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 DHX40Q8IX18 779 aaKnown RBP9.02□□□□□ -0.97
UBR4-201ENST00000375218 CCNYQ8ND76 341 aa9.02□□□□□ -0.97
UBR4-201ENST00000375218 NLGN2Q8NFZ4 835 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms