RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 OR2M4Q96R27 311 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 CNPY3Q9BT09 278 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 SLC39A8Q9C0K1 460 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 STN1Q9H668 368 aaKnown RBP13.8□□□□□ -0.2
VPS29-201ENST00000360579 PCDHB3Q9Y5E6 796 aa13.8□□□□□ -0.2
VPS29-201ENST00000360579 GOLGA6CA6NDK9 693 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 GOLGA6BA6NDN3 693 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 MTSS1O43312 755 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 STK17BO94768 372 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 GOLGA6DP0CG33 693 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 SOX5P35711 763 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 ETV3P41162 512 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 IL10RBQ08334 325 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 MAP7Q14244 749 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 SYCP1Q15431 976 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 TCTN3Q6NUS6 607 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 C16orf46Q6P387 395 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 DNAJC24Q6P3W2 148 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 ARHGAP22Q7Z5H3 698 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 UNC5BQ8IZJ1 945 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 CTRCQ99895 268 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 GOLGA6AQ9NYA3 693 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 TP53TG5Q9Y2B4 290 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 ST14Q9Y5Y6 855 aa13.79□□□□□ -0.2
VPS29-201ENST00000360579 EEF2KO00418 725 aaKnown RBP13.78□□□□□ -0.2
VPS29-201ENST00000360579 POLR1CO15160 346 aaPredicted RBP13.78□□□□□ -0.2
VPS29-201ENST00000360579 DAPK3O43293 454 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 HTRA2O43464 458 aaPredicted RBP13.78□□□□□ -0.2
VPS29-201ENST00000360579 GADD45BO75293 160 aaPredicted RBP13.78□□□□□ -0.2
VPS29-201ENST00000360579 CPP00450 1065 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 PYGLP06737 847 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 HSPA9P38646 679 aaKnown RBP13.78□□□□□ -0.2
VPS29-201ENST00000360579 STAT5AP42229 794 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 POLD2P49005 469 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 DPTQ07507 201 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 CAMK4Q16566 473 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 CLEC16AQ2KHT3 1053 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 SNAP47Q5SQN1 464 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 TMCO4Q5TGY1 634 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 DENND2CQ68D51 928 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 DOK6Q6PKX4 331 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 TIPARPQ7Z3E1 657 aaKnown RBP13.78□□□□□ -0.2
VPS29-201ENST00000360579 CBARPQ8N350 705 aaPredicted RBP13.78□□□□□ -0.2
VPS29-201ENST00000360579 SFRP1Q8N474 314 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 SLC37A2Q8TED4 501 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 PDCD6IPQ8WUM4 868 aaKnown RBP13.78□□□□□ -0.2
VPS29-201ENST00000360579 SH3KBP1Q96B97 665 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 ZNF599Q96NL3 588 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 MCEEQ96PE7 176 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 PRDM8Q9NQV8 689 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 PLEKHB1Q9UF11 243 aaPredicted RBP13.78□□□□□ -0.2
VPS29-201ENST00000360579 DACH1Q9UI36 760 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 PHTF1Q9UMS5 762 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 KCNMB2Q9Y691 235 aa13.78□□□□□ -0.2
VPS29-201ENST00000360579 A8MU76 341 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 DFFAO00273 331 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 VPS4BO75351 444 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 AGFG2O95081 481 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 DLGAP3O95886 979 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 EEF1GP26641 437 aaKnown RBP13.77□□□□□ -0.21
VPS29-201ENST00000360579 GPR1P46091 355 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 EPHA4P54764 986 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 JAM2P57087 298 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 HHEXQ03014 270 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 LBRQ14739 615 aaKnown RBP13.77□□□□□ -0.21
VPS29-201ENST00000360579 HSP90AA4PQ58FG1 418 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.77□□□□□ -0.21
VPS29-201ENST00000360579 FHL5Q5TD97 284 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 DCUN1D2Q6PH85 259 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 ADAMTSL4Q6UY14 1074 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 Q6ZVL8 140 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 HSD11B1LQ7Z5J1 315 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 GALNT13Q8IUC8 556 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 CCDC13Q8IYE1 715 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 PTCD2Q8WV60 388 aaKnown RBP13.77□□□□□ -0.21
VPS29-201ENST00000360579 MARVELD3Q96A59 401 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 PCDHB18PQ96TA0 734 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 VPS16Q9H269 839 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 GANQ9H2C0 597 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 EPB41L1Q9H4G0 881 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 SARS2Q9NP81 518 aaKnown RBP13.77□□□□□ -0.21
VPS29-201ENST00000360579 VPS4AQ9UN37 437 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 AP4E1Q9UPM8 1137 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 PCDHGC4Q9Y5F7 938 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 RPS6KL1Q9Y6S9 549 aa13.77□□□□□ -0.21
VPS29-201ENST00000360579 TCRBV5S1A1TA0A578 114 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 ENO4A6NNW6 628 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 MAP3K6O95382 1288 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 KRT7P08729 469 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 SLC2A4P14672 509 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 LHCGRP22888 699 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 ZNF135P52742 658 aaPredicted RBP13.76□□□□□ -0.21
VPS29-201ENST00000360579 MLLT10P55197 1068 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 POLR2FP61218 127 aaKnown RBP13.76□□□□□ -0.21
VPS29-201ENST00000360579 RPL7AP62424 266 aaKnown RBP13.76□□□□□ -0.21
VPS29-201ENST00000360579 ZNF235Q14590 738 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 PYCR3Q53H96 274 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 RALGPS1Q5JS13 557 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 RFX8Q6ZV50 586 aa13.76□□□□□ -0.21
VPS29-201ENST00000360579 ASB18Q6ZVZ8 466 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms