RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 PNPLA1Q8N8W4 532 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 MAPK15Q8TD08 544 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 IGSF8Q969P0 613 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 MYLPFQ96A32 169 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 MOCOSQ96EN8 888 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 SPATA17Q96L03 361 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 SENP8Q96LD8 212 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 UBXN10Q96LJ8 280 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 MTG1Q9BT17 334 aaPredicted RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 KIFC1Q9BW19 673 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 RSPO3Q9BXY4 272 aaPredicted RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 RAB17Q9H0T7 212 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 EBF2Q9HAK2 575 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 CD248Q9HCU0 757 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 IL1RAPL1Q9NZN1 696 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 MYOTQ9UBF9 498 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 NKX1-2Q9UD57 310 aaPredicted RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 SRRDQ9UH36 339 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 DPP7Q9UHL4 492 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 SCML2Q9UQR0 700 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 PLLPQ9Y342 182 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 UTP11Q9Y3A2 253 aaKnown RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 ACTL7AQ9Y615 435 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 FAM169AQ9Y6X4 670 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 PCDH15Q96QU1 1955 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 FER1L5A0AVI2 2057 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 PCSK5Q92824 1860 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 SLC12A8A0AV02 714 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 TMEM110-MUSTN1A8MSY1 372 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 I3L4J1 428 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 LDB2O43679 373 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 BUD23O43709 281 aaKnown RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 AP1G1O43747 822 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 SORBS2O94875 1100 aaKnown RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 TGDSO95455 350 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 TSPAN15O95858 294 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 SLC35E2BP0CK96 405 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 RBP3P10745 1247 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 HAPLN1P10915 354 aaPredicted RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 CD19P15391 556 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 KCNA5P22460 613 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 RPL9P32969 192 aaKnown RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 GDNFP39905 211 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 GARSP41250 739 aaKnown RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 MAGEA11P43364 429 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 CCT5P48643 541 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 NR2C2P49116 596 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 MRPL19P49406 292 aaKnown RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 HARS2P49590 506 aaKnown RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 HUNKP57058 714 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 ELF3P78545 371 aaPredicted RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 IL10RAQ13651 578 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 SLMAPQ14BN4 828 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 ACAP2Q15057 778 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 STILQ15468 1287 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 ALFQ53S48 1182 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 MDH1BQ5I0G3 518 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 ANKRD20A2Q5SQ80 823 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 TMEM240Q5SV17 173 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 ANKRD20A1Q5TYW2 823 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 ANKRD20A3Q5VUR7 823 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 DNAJC24Q6P3W2 148 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 RPTNQ6XPR3 784 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 RFX8Q6ZV50 586 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 ZSWIM9Q86XI8 627 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 LILRA2Q8N149 483 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 UMODL1-AS1Q8N2C9 162 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 RIBC1Q8N443 379 aaPredicted RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 LZTR1Q8N653 840 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 ENDOVQ8N8Q3 282 aaKnown RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 CCDC26Q8TAB7 109 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 CCDC110Q8TBZ0 833 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 WFDC5Q8TCV5 224 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 MAGEC3Q8TD91 643 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 HAPLN3Q96S86 360 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 GAD1Q99259 594 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 PAFAH2Q99487 392 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 EBNA1BP2Q99848 306 aaKnown RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 CLSTN3Q9BQT9 956 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 COLEC11Q9BWP8 271 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 ACE2Q9BYF1 805 aaPredicted RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 ZNF700Q9H0M5 742 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 GBA3Q9H227 469 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 RSAD1Q9HA92 442 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 MRM3Q9HC36 420 aaKnown RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 TBC1D13Q9NVG8 400 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 DNAJC17Q9NVM6 304 aaKnown RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 ARGLU1Q9NWB6 273 aaPredicted RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 DNAJC28Q9NX36 388 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 MBD1Q9UIS9 605 aaPredicted RBP2.34□□□□□ -2.03
VPS54-202ENST00000354504 CDH9Q9ULB4 789 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 CCL27Q9Y4X3 112 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 SNX9Q9Y5X1 595 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 KIAA1549Q9HCM3 1950 aa2.34□□□□□ -2.03
VPS54-202ENST00000354504 WDR27A2RRH5 827 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 TRIM43BA6NCK2 446 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 ASPDHA6ND91 283 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 PRAMEF25A6NGN4 478 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 H3BNX3 289 aa2.34□□□□□ -2.04
VPS54-202ENST00000354504 TPD52L2O43399 206 aaKnown RBP2.34□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms