RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 H3BNC9 293 aa21.73■■□□□ 1.07
SHMT1-202ENST00000352886 MRASO14807 208 aa21.73■■□□□ 1.07
SHMT1-202ENST00000352886 ADAM12O43184 909 aa21.73■■□□□ 1.07
SHMT1-202ENST00000352886 RHOBTB1O94844 696 aa21.73■■□□□ 1.07
SHMT1-202ENST00000352886 ALDOCP09972 364 aaKnown RBP21.73■■□□□ 1.07
SHMT1-202ENST00000352886 GFAPP14136 432 aa21.73■■□□□ 1.07
SHMT1-202ENST00000352886 FMO4P31512 558 aa21.73■■□□□ 1.07
SHMT1-202ENST00000352886 RALGDSQ12967 914 aa21.73■■□□□ 1.07
SHMT1-202ENST00000352886 LAYNQ6UX15 382 aa21.73■■□□□ 1.07
SHMT1-202ENST00000352886 TSEN34Q9BSV6 310 aaKnown RBP21.73■■□□□ 1.07
SHMT1-202ENST00000352886 TFB2MQ9H5Q4 396 aaKnown RBP21.73■■□□□ 1.07
SHMT1-202ENST00000352886 AKTIPQ9H8T0 292 aa21.73■■□□□ 1.07
SHMT1-202ENST00000352886 SPAG4Q9NPE6 437 aa21.73■■□□□ 1.07
SHMT1-202ENST00000352886 INSIG1O15503 277 aa21.72■■□□□ 1.07
SHMT1-202ENST00000352886 NRP2O60462 931 aa21.72■■□□□ 1.07
SHMT1-202ENST00000352886 FOXA1P55317 472 aa21.72■■□□□ 1.07
SHMT1-202ENST00000352886 STX1BP61266 288 aa21.72■■□□□ 1.07
SHMT1-202ENST00000352886 ST13P4Q8IZP2 240 aaPredicted RBP21.72■■□□□ 1.07
SHMT1-202ENST00000352886 MDGA1Q8NFP4 955 aa21.72■■□□□ 1.07
SHMT1-202ENST00000352886 BCL7CQ8WUZ0 217 aaPredicted RBP21.72■■□□□ 1.07
SHMT1-202ENST00000352886 SMIM14Q96QK8 99 aa21.72■■□□□ 1.07
SHMT1-202ENST00000352886 CDK5RAP1Q96SZ6 601 aaKnown RBP21.72■■□□□ 1.07
SHMT1-202ENST00000352886 MRPL40Q9NQ50 206 aaKnown RBP21.72■■□□□ 1.07
SHMT1-202ENST00000352886 ARVCFO00192 962 aa21.72■■□□□ 1.07
SHMT1-202ENST00000352886 TRIM24O15164 1050 aa21.72■■□□□ 1.07
SHMT1-202ENST00000352886 KDELR3O43731 214 aa21.72■■□□□ 1.07
SHMT1-202ENST00000352886 TLR1Q15399 786 aa21.72■■□□□ 1.07
SHMT1-202ENST00000352886 PAQR3Q6TCH7 311 aa21.72■■□□□ 1.07
SHMT1-202ENST00000352886 FBXO22Q8NEZ5 403 aa21.72■■□□□ 1.07
SHMT1-202ENST00000352886 TWIST2Q8WVJ9 160 aa21.72■■□□□ 1.07
SHMT1-202ENST00000352886 FAM192AQ9GZU8 254 aa21.72■■□□□ 1.07
SHMT1-202ENST00000352886 SYTL2Q9HCH5 934 aa21.72■■□□□ 1.07
SHMT1-202ENST00000352886 MED16Q9Y2X0 877 aa21.72■■□□□ 1.07
SHMT1-202ENST00000352886 PRORSD1PA6NEY8 169 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 SRP72O76094 671 aaKnown RBP21.71■■□□□ 1.07
SHMT1-202ENST00000352886 FGF4P08620 206 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 PIM1P11309 404 aaPredicted RBP21.71■■□□□ 1.07
SHMT1-202ENST00000352886 ATP4BP51164 291 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 SGSHP51688 502 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 KIF19Q2TAC6 998 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 AFTPHQ6ULP2 937 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 ADCY4Q8NFM4 1077 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 TRPC4APQ8TEL6 797 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 LPGAT1Q92604 370 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 CCDC68Q9H2F9 335 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 SCUBE2Q9NQ36 999 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 TAS2R13Q9NYV9 303 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 ANKRD12Q6UB98 2062 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 SUPT3HB4E1H0 165 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 AZIN1O14977 448 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 SUPT3HO75486 399 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 RPL17P18621 184 aaKnown RBP21.71■■□□□ 1.07
SHMT1-202ENST00000352886 ACADVLP49748 655 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 GRM2Q14416 872 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 SETMARQ53H47 684 aaPredicted RBP21.71■■□□□ 1.07
SHMT1-202ENST00000352886 LHX8Q68G74 356 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 TICAM1Q8IUC6 712 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 FUNDC1Q8IVP5 155 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 CATSPER1Q8NEC5 780 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 ATP6V1E2Q96A05 226 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 KIAA1191Q96A73 305 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 KCNA7Q96RP8 456 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 TDRD1Q9BXT4 1180 aaKnown RBP21.71■■□□□ 1.07
SHMT1-202ENST00000352886 GIMAP2Q9UG22 337 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 RNF112Q9ULX5 631 aa21.71■■□□□ 1.07
SHMT1-202ENST00000352886 TBKBP1A7MCY6 615 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 PIP5K1BO14986 540 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 COCHO43405 550 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 KERAO60938 352 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 CLASP2O75122 1294 aaKnown RBP21.7■■□□□ 1.06
SHMT1-202ENST00000352886 RNASEH2AO75792 299 aaKnown RBP21.7■■□□□ 1.06
SHMT1-202ENST00000352886 PRLP01236 227 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 RHOCP08134 193 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 CR2P20023 1033 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 GPX3P22352 226 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 CHN2P52757 468 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 TAF1AQ15573 450 aaPredicted RBP21.7■■□□□ 1.06
SHMT1-202ENST00000352886 IL23RQ5VWK5 629 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 UGT2A3Q6UWM9 527 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 LPCAT1Q8NF37 534 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 STAG3L4Q8TBR4 150 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 RAET1EQ8TD07 263 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 ZBED2Q9BTP6 218 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 CROTQ9UKG9 612 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 IKZF3Q9UKT9 509 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 CBX4O00257 560 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 NDUFS3O75489 264 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 CLDN11O75508 207 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 KLKB1P03952 638 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 CDKN1CP49918 316 aaPredicted RBP21.7■■□□□ 1.06
SHMT1-202ENST00000352886 NME5P56597 212 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 KANK2Q63ZY3 851 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 NPAS4Q8IUM7 802 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 DDIASQ8IXT1 998 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 SLC39A3Q9BRY0 314 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 DERL2Q9GZP9 239 aa21.7■■□□□ 1.06
SHMT1-202ENST00000352886 ARIH1Q9Y4X5 557 aaPredicted RBP21.7■■□□□ 1.06
SHMT1-202ENST00000352886 ZNF840PA6NDX5 716 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 C2orf81A6NN90 581 aa21.69■■□□□ 1.06
SHMT1-202ENST00000352886 DENRO43583 198 aaKnown RBP21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms