RNA–Protein interactions for RNA: ENST00000344627.10

SGCA-202, Transcript of sarcoglycan alpha, humanhuman

TSL 1 (best) BASIC

Gene SGCA, Length 1,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-202ENST00000344627 CCNB1P14635 433 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 MX2P20592 715 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 CA4P22748 312 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 CCNCP24863 283 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 SLC5A2P31639 672 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 HNRNPH3P31942 346 aaKnown RBP12.39□□□□□ -0.43
SGCA-202ENST00000344627 GPR3P46089 330 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 GPR1P46091 355 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 GNPDA1P46926 289 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 ARSEP51690 589 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 DSC2Q02487 901 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 TRA2AQ13595 282 aaKnown RBP eCLIP12.39□□□□□ -0.43
SGCA-202ENST00000344627 DOK6Q6PKX4 331 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 USP53Q70EK8 1073 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 TEX26Q8N6G2 289 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 CCL4L1Q8NHW4 92 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 FAM71BQ8TC56 605 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.39□□□□□ -0.43
SGCA-202ENST00000344627 DTD2Q96FN9 168 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 CCDC42Q96M95 316 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 ZNF670Q9BS34 389 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 ANP32EQ9BTT0 268 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 FOXP3Q9BZS1 431 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 SPTLC3Q9NUV7 552 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 TRNAU1APQ9NX07 287 aaKnown RBP12.39□□□□□ -0.43
SGCA-202ENST00000344627 LCMT1Q9UIC8 334 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 RABGEF1Q9UJ41 708 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 HEY1Q9Y5J3 304 aa12.39□□□□□ -0.43
SGCA-202ENST00000344627 HELZ2Q9BYK8 2649 aaKnown RBP12.38□□□□□ -0.43
SGCA-202ENST00000344627 A0A1W2PQM1 296 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 LRRD1A4D1F6 860 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 CPNE6O95741 557 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 PYGLP06737 847 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 PDHA1P08559 390 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 TMEM253P0C7T8 217 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 MYCLP1P12525 358 aaPredicted RBP12.38□□□□□ -0.43
SGCA-202ENST00000344627 LHCGRP22888 699 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 CES1P23141 567 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 KDELR1P24390 212 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 GBE1Q04446 702 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 HLTFQ14527 1009 aaKnown RBP eCLIP12.38□□□□□ -0.43
SGCA-202ENST00000344627 NR1D2Q14995 579 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 RFLNAQ6ZTI6 216 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 PIM3Q86V86 326 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 CCDC112Q8NEF3 446 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 LPCAT1Q8NF37 534 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 SLC35G2Q8TBE7 412 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 PIH1D2Q8WWB5 315 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 RAPGEF5Q92565 580 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 MAML1Q92585 1016 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 AP2M1Q96CW1 435 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 SMIM14Q96QK8 99 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 DNAJC7Q99615 494 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 CHP1Q99653 195 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 GSDMCQ9BYG8 508 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 NHEJ1Q9H9Q4 299 aaPredicted RBP12.38□□□□□ -0.43
SGCA-202ENST00000344627 LRIT1Q9P2V4 623 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 SUFUQ9UMX1 484 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 NENFQ9UMX5 172 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 LOXL2Q9Y4K0 774 aa12.38□□□□□ -0.43
SGCA-202ENST00000344627 SSU72P8A0A1W2PR75 194 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 RHPN2P1A8MT19 583 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 ASMTLO95671 621 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 JCHAINP01591 159 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 POLD2P49005 469 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 PPM1FP49593 454 aaPredicted RBP12.37□□□□□ -0.43
SGCA-202ENST00000344627 CDK3Q00526 305 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 KCNC4Q03721 635 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 AP1B1Q10567 949 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 ILF3Q12906 894 aaKnown RBP eCLIP12.37□□□□□ -0.43
SGCA-202ENST00000344627 SQSTM1Q13501 440 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 MANEAQ5SRI9 462 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 LRRC66Q68CR7 880 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 SLC30A9Q6PML9 568 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 MARK2Q7KZI7 788 aaKnown RBP12.37□□□□□ -0.43
SGCA-202ENST00000344627 SPRED1Q7Z699 444 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 NLRP8Q86W28 1048 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 C17orf82Q86X59 251 aaPredicted RBP12.37□□□□□ -0.43
SGCA-202ENST00000344627 JAMLQ86YT9 394 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 VSTM4Q8IW00 320 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 SFTPA2Q8IWL1 248 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 CCDC13Q8IYE1 715 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 PQLC3Q8N755 202 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 GPBAR1Q8TDU6 330 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 ZDHHC1Q8WTX9 485 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 TSGA13Q96PP4 275 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 RNF157Q96PX1 679 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 ARHGAP9Q9BRR9 750 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 TEX101Q9BY14 249 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 FAM117AQ9C073 453 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 ABCG8Q9H221 673 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 CLMPQ9H6B4 373 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 ABHD10Q9NUJ1 306 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 DNPEPQ9ULA0 475 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 TMEM98Q9Y2Y6 226 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 HEMK1Q9Y5R4 338 aaPredicted RBP12.37□□□□□ -0.43
SGCA-202ENST00000344627 RNF215Q9Y6U7 377 aa12.37□□□□□ -0.43
SGCA-202ENST00000344627 A0A0J9YYE9 177 aa12.36□□□□□ -0.43
SGCA-202ENST00000344627 PMS2P1A4D2B8 440 aa12.36□□□□□ -0.43
SGCA-202ENST00000344627 KCNK1O00180 336 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms