RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ITGB5P18084 799 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 AADACL2Q6P093 401 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 GCNT7Q6ZNI0 430 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 PCDH20Q8N6Y1 951 aaKnown RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 TSPEARQ8WU66 669 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 REXO5Q96IC2 774 aaKnown RBP10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 GLOD4Q9HC38 313 aa10.28□□□□□ -0.76
CCDC88A-202ENST00000336838 XYLBO75191 536 aa10.27□□□□□ -0.76
CCDC88A-202ENST00000336838 REM1O75628 298 aa10.27□□□□□ -0.76
CCDC88A-202ENST00000336838 CSH1P0DML2 217 aa10.27□□□□□ -0.76
CCDC88A-202ENST00000336838 CSH2P0DML3 217 aa10.27□□□□□ -0.76
CCDC88A-202ENST00000336838 PSEN2P49810 448 aa10.27□□□□□ -0.76
CCDC88A-202ENST00000336838 SPESP1Q6UW49 350 aa10.27□□□□□ -0.76
CCDC88A-202ENST00000336838 TAS2R1Q9NYW7 299 aa10.27□□□□□ -0.76
CCDC88A-202ENST00000336838 COG5Q9UP83 839 aa10.27□□□□□ -0.76
CCDC88A-202ENST00000336838 CNTN6Q9UQ52 1028 aa10.27□□□□□ -0.76
CCDC88A-202ENST00000336838 IGKV6D-41A0A0C4DH26 115 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 GABRDO14764 452 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 PRPS2P11908 318 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 PIK3CBP42338 1070 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 IDH2P48735 452 aaKnown RBP10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 LAPTM5Q13571 262 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 KIAA0930Q6ICG6 404 aaPredicted RBP10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 TMPRSS11AQ6ZMR5 421 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 USP7Q93009 1102 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 AGAP2Q99490 1192 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 OR6C75A6NL08 312 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 DCDC2CA8MYV0 355 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 RFXANKO14593 260 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 MTHFRP42898 656 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 MRPS6P82932 125 aaKnown RBP10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 TAF5Q15542 800 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 PTPRNQ16849 979 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 TIFABQ6ZNK6 161 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 RAB43Q86YS6 212 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 ZZZ3Q8IYH5 903 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 PHACTR4Q8IZ21 702 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 CDYL2Q8N8U2 506 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 MTMR14Q8NCE2 650 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 EPB41L1Q9H4G0 881 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 DHFRP00374 187 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 IL1BP01584 269 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 PIGRP01833 764 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 THRBP10828 461 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 SLC1A5Q15758 541 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 ZBED5Q49AG3 693 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 USP43Q70EL4 1123 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 PIGZQ86VD9 579 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 C9orf43Q8TAL5 461 aaPredicted RBP10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 ULBP1Q9BZM6 244 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 ZNF624Q9P2J8 865 aaPredicted RBP10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 RNF225M0QZC1 329 aaPredicted RBP10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 CLDN11O75508 207 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 C2P06681 752 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 TPH1P17752 444 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 DGCR6Q14129 220 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 GPR107Q5VW38 600 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 RINLQ6ZS11 566 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 PSMA8Q8TAA3 256 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 NTAN1Q96AB6 310 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 GALNT8Q9NY28 637 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 ZNF221Q9UK13 617 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 COL2A1P02458 1487 aaPredicted RBP10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 ARL2P36404 184 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 PTPN20Q4JDL3 420 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 CPTPQ5TA50 214 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 ARL10Q8N8L6 244 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 DNAJB14Q8TBM8 379 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 PANX1Q96RD7 426 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 LRRC3Q9BY71 257 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 SEMA3GQ9NS98 782 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 POMPQ9Y244 141 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 ELOVL7A1L3X0 281 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 SLC7A4O43246 635 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 L1CAMP32004 1257 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 TIE1P35590 1138 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 P2RY8Q86VZ1 359 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 LGI2Q8N0V4 545 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 CCDC3Q9BQI4 270 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 KLQ9UEF7 1012 aa10.27□□□□□ -0.77
CCDC88A-202ENST00000336838 CSDE1O75534 798 aaKnown RBP10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 IGFBP5P24593 272 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 KIR3DL1P43629 444 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 FKBP1BP68106 108 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 LY6KQ17RY6 165 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 HECTD3Q5T447 861 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 RNF148Q8N7C7 305 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 POC5Q8NA72 575 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 MAFBQ9Y5Q3 323 aaPredicted RBP10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 M0R2N6 131 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 PLK1P53350 603 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 IRF8Q02556 426 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 ZFP69Q49AA0 526 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 ANKRD23Q86SG2 305 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 LINC00471Q8N535 108 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 HAPLN3Q96S86 360 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 LGMNQ99538 433 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 PCDHA2Q9Y5H9 948 aa10.26□□□□□ -0.77
CCDC88A-202ENST00000336838 MANSC4A6NHS7 340 aaPredicted RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms