RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 FASTKD1Q53R41 847 aaKnown RBP14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 HABP4Q5JVS0 413 aaKnown RBP14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 ERAP2Q6P179 960 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 CLEC14AQ86T13 490 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 CHPFQ8IZ52 775 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 LPGAT1Q92604 370 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 ARRDC3Q96B67 414 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 SELENOSQ9BQE4 189 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 CD248Q9HCU0 757 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 IL26Q9NPH9 171 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 SNX15Q9NRS6 342 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 HEBP1Q9NRV9 189 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 SMOXQ9NWM0 555 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 MTO1Q9Y2Z2 717 aaKnown RBP14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 F5P12259 2224 aa14.88□□□□□ -0.03
CCDC88C-202ENST00000334448 ZNF106Q9H2Y7 1883 aaKnown RBP14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 FAM95CA0A1B0GW59 222 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 KPNA3O00505 521 aaPredicted RBP14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 HAUS5O94927 633 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 ADH1BP00325 375 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 EGFP01133 1207 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 ASGR2P07307 311 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 GSTA1P08263 222 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 CHN1P15882 459 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 CRABP2P29373 138 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 ETV4P43268 484 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 SPINT3P49223 89 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 ATP1A2P50993 1020 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 GYS2P54840 703 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 PDE1CQ14123 709 aaPredicted RBP14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 SMAD1Q15797 465 aaKnown RBP14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 LYPLAL1Q5VWZ2 237 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 ERN2Q76MJ5 926 aaKnown RBP14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 CYP2U1Q7Z449 544 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 SNX20Q7Z614 316 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 PIANPQ8IYJ0 282 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 OR2T3Q8NH03 318 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 ATXN2LQ8WWM7 1075 aaKnown RBP14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 PBXIP1Q96AQ6 731 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 POPDC3Q9HBV1 291 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 FBXO6Q9NRD1 293 aaPredicted RBP14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 NKIRAS1Q9NYS0 192 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 DUSP12Q9UNI6 340 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 CKAP5Q14008 2032 aa14.87□□□□□ -0.03
CCDC88C-202ENST00000334448 SCN8AQ9UQD0 1980 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 GLYATL1P3A0A0U1RQE8 302 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 MAN2B1O00754 1011 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 COPEO14579 308 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 AP1G1O43747 822 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 GLRA3O75311 464 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 SRP72O76094 671 aaKnown RBP14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 WISP3O95389 354 aaPredicted RBP14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 PRAMEF1O95521 474 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 ASMTLO95671 621 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 SLC4A1P02730 911 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 DHRS4L1P0CG22 281 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 COL6A2P12110 1019 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 ADRB3P13945 408 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 ITGALP20701 1170 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 XPAP23025 273 aaPredicted RBP14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 TYK2P29597 1187 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 SLC26A3P40879 764 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 NFATC2Q13469 925 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 CCINQ13939 588 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 ARHGEF7Q14155 803 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 PON2Q15165 354 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 TMEM52BQ4KMG9 183 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 C2orf27AQ580R0 203 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 ZNF789Q5FWF6 425 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 FAM45BPQ6NSW5 357 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 CNSTQ6PJW8 725 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 ZNF765Q7L2R6 523 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 TECPR1Q7Z6L1 1165 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 TTC7BQ86TV6 843 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 NRSN1Q8IZ57 195 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 OTUD6BQ8N6M0 293 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 IL17RCQ8NAC3 791 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 ACVR1CQ8NER5 493 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 MDM1Q8TC05 714 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 FAM45AQ8TCE6 357 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 TSPAN17Q96FV3 270 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 OMDQ99983 421 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 BPIFA1Q9NP55 256 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 INTS9Q9NV88 658 aaKnown RBP14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 PKD2L2Q9NZM6 624 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 ANKRD6Q9Y2G4 727 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 COMMD10Q9Y6G5 202 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 SLC30A1Q9Y6M5 507 aa14.86□□□□□ -0.03
CCDC88C-202ENST00000334448 ANTXRLA6NF34 631 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 NARSO43776 548 aaKnown RBP14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 RNASEH1O60930 286 aaKnown RBP14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 ADAM23O75077 832 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 SPAG7O75391 227 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 IL1BP01584 269 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 IL9P15248 144 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 C5AR1P21730 350 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 RPS3P23396 243 aaKnown RBP eCLIP14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 PMLP29590 882 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 RPA3P35244 121 aaPredicted RBP14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms