RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 C4orf22Q6V702 233 aa15.84■□□□□ 0.13
CCDC28A-201ENST00000332797 NYAP1Q6ZVC0 841 aa15.84■□□□□ 0.13
CCDC28A-201ENST00000332797 LINC00523Q86TU6 105 aa15.84■□□□□ 0.13
CCDC28A-201ENST00000332797 HEATR4Q86WZ0 1026 aa15.84■□□□□ 0.13
CCDC28A-201ENST00000332797 GRK7Q8WTQ7 553 aa15.84■□□□□ 0.13
CCDC28A-201ENST00000332797 AGAP2Q99490 1192 aa15.84■□□□□ 0.13
CCDC28A-201ENST00000332797 LGR4Q9BXB1 951 aa15.84■□□□□ 0.13
CCDC28A-201ENST00000332797 PHPT1Q9NRX4 125 aaPredicted RBP15.84■□□□□ 0.13
CCDC28A-201ENST00000332797 RAD18Q9NS91 495 aa15.84■□□□□ 0.13
CCDC28A-201ENST00000332797 PIH1D1Q9NWS0 290 aaKnown RBP15.84■□□□□ 0.13
CCDC28A-201ENST00000332797 FEZ2Q9UHY8 353 aaPredicted RBP15.84■□□□□ 0.13
CCDC28A-201ENST00000332797 SDC3O75056 442 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 SOD1P00441 154 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 KRT14P02533 472 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 APRTP07741 180 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 CD59P13987 128 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 BPIP17213 487 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 HMGCLP35914 325 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 PAFAH1B1P43034 410 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 RXRGP48443 463 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 TERF1P54274 439 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 EIF2B5Q13144 721 aaKnown RBP15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 HENMT1Q5T8I9 393 aaKnown RBP15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 ENPP7Q6UWV6 458 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 PPP1R21Q6ZMI0 780 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 GATAD2AQ86YP4 633 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 GPR26Q8NDV2 337 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 WDR92Q96MX6 357 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 TEX101Q9BY14 249 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 DDX47Q9H0S4 455 aaKnown RBP15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 CAAP1Q9H8G2 361 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 ARNT2Q9HBZ2 717 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 ARL5AQ9Y689 179 aa15.83■□□□□ 0.12
CCDC28A-201ENST00000332797 SCN8AQ9UQD0 1980 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 PDE2AO00408 941 aaPredicted RBP15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 INPP4BO15327 924 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 GAS8O95995 478 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 CSF2P04141 144 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 PYGLP06737 847 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 HOXC4P09017 264 aaPredicted RBP15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 MYCLP1P12525 358 aaPredicted RBP15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 NME1P15531 152 aaKnown RBP15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 TPH1P17752 444 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 KELP23276 732 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 TEAD1P28347 426 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 DCDC1P59894 354 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 CDK3Q00526 305 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 BNIP3Q12983 259 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 GPS1Q13098 491 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 SUZ12Q15022 739 aaKnown RBP15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 TAF1AQ15573 450 aaPredicted RBP15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 ADAMTSL4Q6UY14 1074 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 NLRP8Q86W28 1048 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 DNAAF3Q8N9W5 541 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 OR52K1Q8NGK4 314 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 RTKNQ9BST9 563 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 SPATA16Q9BXB7 569 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 CDH19Q9H159 772 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 KLQ9UEF7 1012 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 KLF15Q9UIH9 416 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 PNMA8BQ9ULN7 279 aaPredicted RBP15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 PKP3Q9Y446 797 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 PCDHGB2Q9Y5G2 931 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 CEP250Q9BV73 2442 aa15.82■□□□□ 0.12
CCDC28A-201ENST00000332797 TMEM202A6NGA9 273 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 C2orf81A6NN90 581 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 FADS2P1A8MWK0 482 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 H3BM21 787 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 STX7O15400 261 aaKnown RBP15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 PCDHGA12O60330 932 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 SUN1O94901 812 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 ECEL1O95672 775 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 JUNDP17535 347 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 HNRNPKP61978 463 aaKnown RBP eCLIP15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 PPARDQ03181 441 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 CDH17Q12864 832 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 SEPT6Q14141 434 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 ALG11Q2TAA5 492 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 RD3Q7Z3Z2 195 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 TRIM74Q86UV6 250 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 HID1Q8IV36 788 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 NAXDQ8IW45 347 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 KLHL7Q8IXQ5 586 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 PHACTR4Q8IZ21 702 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 RBFAQ8N0V3 343 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 OR56A4Q8NGH8 313 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 BRSK1Q8TDC3 778 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 SAP25Q8TEE9 199 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 SETD7Q8WTS6 366 aaKnown RBP15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 TSACCQ96A04 125 aaPredicted RBP15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 ZSCAN5AQ9BUG6 496 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 IL17CQ9P0M4 197 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 NFKBIL1Q9UBC1 381 aaPredicted RBP15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 RNF14Q9UBS8 474 aa15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 APOBEC3BQ9UH17 382 aaKnown RBP15.81■□□□□ 0.12
CCDC28A-201ENST00000332797 KNL1Q8NG31 2342 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 MYLKQ15746 1914 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 FLRT2O43155 660 aa15.8■□□□□ 0.12
CCDC28A-201ENST00000332797 SH3BP5O60239 455 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms