RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 POC5Q8NA72 575 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 PDPRQ8NCN5 879 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 SPATA22Q8NHS9 363 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 WDR12Q9GZL7 423 aaKnown RBP13.47□□□□□ -0.25
SKA3-201ENST00000298260 CDHR5Q9HBB8 845 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 SPC25Q9HBM1 224 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 TTC24A2A3L6 582 aaPredicted RBP13.47□□□□□ -0.25
SKA3-201ENST00000298260 AQP12BA6NM10 295 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 USP2O75604 605 aaPredicted RBP13.47□□□□□ -0.25
SKA3-201ENST00000298260 APOA4P06727 396 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 IQCF3P0C7M6 154 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 STMN1P16949 149 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 NFKB1P19838 968 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 CXCR3P49682 368 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 DIO3P55073 304 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 RAB10P61026 200 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 PHC1P78364 1004 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 GATAD2AQ86YP4 633 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 ARMC8Q8IUR7 673 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 PSTKQ8IV42 348 aaKnown RBP13.47□□□□□ -0.25
SKA3-201ENST00000298260 AQP12AQ8IXF9 295 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 ELMOD1Q8N336 334 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 CNIH3Q8TBE1 160 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 CALML6Q8TD86 181 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 TMBIM1Q969X1 311 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 FAM149B1Q96BN6 582 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 SGIP1Q9BQI5 828 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 DPEP3Q9H4B8 488 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 RHOJQ9H4E5 214 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 IL37Q9NZH6 218 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 ACTR3BQ9P1U1 418 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 MID2Q9UJV3 735 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 A0A1B0GTL3 188 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 ILVBLA1L0T0 632 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 TNFRSF10AO00220 468 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 TAF4O00268 1085 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 MFN2O95140 757 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 ALOX5P09917 674 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 JUNBP17275 347 aaPredicted RBP13.46□□□□□ -0.25
SKA3-201ENST00000298260 CD40LGP29965 261 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 POLD2P49005 469 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 ARSFP54793 590 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 LIPEQ05469 1076 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 LAMTOR4Q0VGL1 99 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 ESRP1Q6NXG1 681 aaKnown RBP13.46□□□□□ -0.25
SKA3-201ENST00000298260 SCIMPQ6UWF3 145 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 LCLAT1Q6UWP7 414 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 LARP4Q71RC2 724 aaKnown RBP eCLIP13.46□□□□□ -0.25
SKA3-201ENST00000298260 CYP2U1Q7Z449 544 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 COLGALT2Q8IYK4 626 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 FAM86B1Q8N7N1 296 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 ZUFSPQ96AP4 578 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 BIRC7Q96CA5 298 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 LRRC58Q96CX6 371 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 MRPL45Q9BRJ2 306 aaKnown RBP13.46□□□□□ -0.25
SKA3-201ENST00000298260 MOSPD1Q9UJG1 213 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 ANAPC2Q9UJX6 822 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 PPEF2O14830 753 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 AP2A1O95782 977 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 GSTM2P28161 218 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 OR4D2P58180 307 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 STX1BP61266 288 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 CD47Q08722 323 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 FRG1Q14331 258 aaKnown RBP13.46□□□□□ -0.25
SKA3-201ENST00000298260 PAGE3Q5JUK9 113 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 COLEC12Q5KU26 742 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 NOL9Q5SY16 702 aaKnown RBP13.46□□□□□ -0.25
SKA3-201ENST00000298260 RSBN1Q5VWQ0 802 aaPredicted RBP13.46□□□□□ -0.25
SKA3-201ENST00000298260 DESI1Q6ICB0 168 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 LCN8Q6JVE9 175 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 PIWIL4Q7Z3Z4 852 aaKnown RBP13.46□□□□□ -0.25
SKA3-201ENST00000298260 THAP5Q7Z6K1 395 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 LDB1Q86U70 411 aaPredicted RBP13.46□□□□□ -0.25
SKA3-201ENST00000298260 HOMEZQ8IX15 550 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 CELF2-AS1Q8N7Q2 184 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 CHDHQ8NE62 594 aaPredicted RBP13.46□□□□□ -0.25
SKA3-201ENST00000298260 FIG4Q92562 907 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 DMRTB1Q96MA1 342 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 C17orf80Q9BSJ5 609 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 EMILIN2Q9BXX0 1053 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 ALG2Q9H553 416 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 RMND5AQ9H871 391 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 EIF2B3Q9NR50 452 aaKnown RBP13.46□□□□□ -0.25
SKA3-201ENST00000298260 DPP3Q9NY33 737 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 SNX10Q9Y5X0 201 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 CITO14578 2027 aa13.46□□□□□ -0.25
SKA3-201ENST00000298260 TCRBV5S2A0A599 114 aa13.45□□□□□ -0.26
SKA3-201ENST00000298260 CCL22O00626 93 aa13.45□□□□□ -0.26
SKA3-201ENST00000298260 HOXC11O43248 304 aaPredicted RBP13.45□□□□□ -0.26
SKA3-201ENST00000298260 ASNA1O43681 348 aa13.45□□□□□ -0.26
SKA3-201ENST00000298260 NUAK1O60285 661 aa13.45□□□□□ -0.26
SKA3-201ENST00000298260 NDUFS2O75306 463 aa13.45□□□□□ -0.26
SKA3-201ENST00000298260 SIX3O95343 332 aaPredicted RBP13.45□□□□□ -0.26
SKA3-201ENST00000298260 MT-CYBP00156 380 aaPredicted RBP13.45□□□□□ -0.26
SKA3-201ENST00000298260 LINC00032P0C843 101 aa13.45□□□□□ -0.26
SKA3-201ENST00000298260 PTPN2P17706 415 aa13.45□□□□□ -0.26
SKA3-201ENST00000298260 ATF7IP2Q5U623 682 aa13.45□□□□□ -0.26
SKA3-201ENST00000298260 ZPBP2Q6X784 338 aa13.45□□□□□ -0.26
SKA3-201ENST00000298260 GADL1Q6ZQY3 521 aa13.45□□□□□ -0.26
SKA3-201ENST00000298260 RDM1Q8NG50 284 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms