RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 H2AFY2Q9P0M6 372 aaPredicted RBP15.35■□□□□ 0.05
SHH-201ENST00000297261 CACNG4Q9UBN1 327 aa15.35■□□□□ 0.05
SHH-201ENST00000297261 TMCC3Q9ULS5 477 aa15.35■□□□□ 0.05
SHH-201ENST00000297261 FTH1P02794 183 aa15.35■□□□□ 0.05
SHH-201ENST00000297261 PIRTP0C851 137 aa15.35■□□□□ 0.05
SHH-201ENST00000297261 CLCNKBP51801 687 aa15.35■□□□□ 0.05
SHH-201ENST00000297261 BLVRAP53004 296 aa15.35■□□□□ 0.05
SHH-201ENST00000297261 MYLK3Q32MK0 819 aa15.35■□□□□ 0.05
SHH-201ENST00000297261 PAOXQ6QHF9 649 aa15.35■□□□□ 0.05
SHH-201ENST00000297261 ZNF605Q86T29 641 aa15.35■□□□□ 0.05
SHH-201ENST00000297261 SMYD1Q8NB12 490 aa15.35■□□□□ 0.05
SHH-201ENST00000297261 ST13P5Q8NFI4 369 aaPredicted RBP15.35■□□□□ 0.05
SHH-201ENST00000297261 FAR1Q8WVX9 515 aa15.35■□□□□ 0.05
SHH-201ENST00000297261 SH3KBP1Q96B97 665 aa15.35■□□□□ 0.05
SHH-201ENST00000297261 DUSP16Q9BY84 665 aa15.35■□□□□ 0.05
SHH-201ENST00000297261 XYLT2Q9H1B5 865 aa15.35■□□□□ 0.05
SHH-201ENST00000297261 NEMP2A6NFY4 417 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 MFSD11O43934 449 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 VPS4BO75351 444 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 SH3BGRLO75368 114 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 CLIC3O95833 236 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 IVDP26440 423 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 S100A3P33764 101 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 GPD2P43304 727 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 CCT3P49368 545 aaKnown RBP15.34■□□□□ 0.05
SHH-201ENST00000297261 ZBED5Q49AG3 693 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 ZNF57Q68EA5 555 aaPredicted RBP15.34■□□□□ 0.05
SHH-201ENST00000297261 DCBLD1Q8N8Z6 715 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 STAG3L4Q8TBR4 150 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 OTUB1Q96FW1 271 aaPredicted RBP15.34■□□□□ 0.05
SHH-201ENST00000297261 G3V2T6 193 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 ABCB1P08183 1280 aaPredicted RBP15.34■□□□□ 0.05
SHH-201ENST00000297261 IQCF3P0C7M6 154 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 PURAQ00577 322 aaKnown RBP15.34■□□□□ 0.05
SHH-201ENST00000297261 EFEMP1Q12805 493 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 OR52E8Q6IFG1 317 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 GALNT5Q7Z7M9 940 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 TMEM130Q8N3G9 435 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 MYLPFQ96A32 169 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 HERPUD2Q9BSE4 406 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 RNF208Q9H0X6 261 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 FADS2O95864 444 aaKnown RBP15.34■□□□□ 0.05
SHH-201ENST00000297261 NTRK1P04629 796 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 ANXA6P08133 673 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 RPL9P32969 192 aaKnown RBP15.34■□□□□ 0.05
SHH-201ENST00000297261 STT3AP46977 705 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 OGDHQ02218 1023 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 MERTKQ12866 999 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 SOWAHAQ2M3V2 549 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 TTC23LQ6PF05 361 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 FAM35AQ86V20 835 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 WDR37Q9Y2I8 494 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 TEX264Q9Y6I9 313 aa15.34■□□□□ 0.05
SHH-201ENST00000297261 FFAR3O14843 346 aa15.33■□□□□ 0.05
SHH-201ENST00000297261 GPR42O15529 346 aa15.33■□□□□ 0.05
SHH-201ENST00000297261 IPO13O94829 963 aaKnown RBP15.33■□□□□ 0.05
SHH-201ENST00000297261 SERPINF2P08697 491 aa15.33■□□□□ 0.05
SHH-201ENST00000297261 KRT20P35900 424 aa15.33■□□□□ 0.05
SHH-201ENST00000297261 CGB2Q6NT52 195 aa15.33■□□□□ 0.05
SHH-201ENST00000297261 BCO2Q9BYV7 579 aa15.33■□□□□ 0.05
SHH-201ENST00000297261 HDHD2Q9H0R4 259 aa15.33■□□□□ 0.05
SHH-201ENST00000297261 OAZ3Q9UMX2 235 aa15.33■□□□□ 0.05
SHH-201ENST00000297261 SERPIND1P05546 499 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 THRBP10828 461 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 MPP1Q00013 466 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 NDUFA5Q16718 116 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 CCNYL2Q5T2Q4 361 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 GPSM1Q86YR5 675 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 PYROXD2Q8N2H3 581 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 HM13Q8TCT9 377 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 SH3BP4Q9P0V3 963 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 KLQ9UEF7 1012 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 GTF2IRD1Q9UHL9 959 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 VWA7Q9Y334 891 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 ARIH1Q9Y4X5 557 aaPredicted RBP15.33■□□□□ 0.04
SHH-201ENST00000297261 TIMM22Q9Y584 194 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 FAM25AB3EWG3 89 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 FAM25CB3EWG5 89 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 FAM25GB3EWG6 89 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 PRRG1O14668 218 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 KRT6AP02538 564 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 KRT6BP04259 564 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 KRT6CP48668 564 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 CDK9P50750 372 aaKnown RBP15.33■□□□□ 0.04
SHH-201ENST00000297261 CLCN5P51795 746 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 SLC16A1P53985 500 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 LIPEQ05469 1076 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 TP53BP2Q13625 1128 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 TTLL9Q3SXZ7 439 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 GATA6Q92908 595 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 MPP6Q9NZW5 540 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 CDV3Q9UKY7 258 aaKnown RBP15.33■□□□□ 0.04
SHH-201ENST00000297261 A0A088AWK7 358 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 AOC2O75106 756 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 RRM2P31350 389 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 HALP42357 657 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 MATKP42679 507 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 MAXP61244 160 aa15.33■□□□□ 0.04
SHH-201ENST00000297261 MRPS5P82675 430 aaKnown RBP15.33■□□□□ 0.04
SHH-201ENST00000297261 IRF9Q00978 393 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms