RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 CRTAMO95727 393 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 LAYNQ6UX15 382 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 LARP4Q71RC2 724 aaKnown RBP eCLIP20.02■□□□□ 0.8
VPS53-201ENST00000291074 LPGAT1Q92604 370 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 KLHL32Q96NJ5 620 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 MID1IP1Q9NPA3 183 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 SMPD4Q9NXE4 827 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 ZDHHC7Q9NXF8 308 aa20.02■□□□□ 0.8
VPS53-201ENST00000291074 ANAPC1Q9H1A4 1944 aa20.02■□□□□ 0.79
VPS53-201ENST00000291074 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.01■□□□□ 0.79
VPS53-201ENST00000291074 A0A1B0GTL3 188 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 E7ENX8 843 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 CLDN11O75508 207 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 ALDOCP09972 364 aaKnown RBP20.01■□□□□ 0.79
VPS53-201ENST00000291074 GFAPP14136 432 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 ALDH1A3P47895 512 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 ZNF177Q13360 481 aaPredicted RBP20.01■□□□□ 0.79
VPS53-201ENST00000291074 PLD1Q13393 1074 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 RNF219Q5W0B1 726 aaPredicted RBP20.01■□□□□ 0.79
VPS53-201ENST00000291074 EFHBQ8N7U6 833 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 NR1H4Q96RI1 486 aaPredicted RBP20.01■□□□□ 0.79
VPS53-201ENST00000291074 CDK5RAP1Q96SZ6 601 aaKnown RBP20.01■□□□□ 0.79
VPS53-201ENST00000291074 BPIFA1Q9NP55 256 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 DNAJC15Q9Y5T4 150 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 CAPN8A6NHC0 703 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 SNAP91O60641 907 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 SRP72O76094 671 aaKnown RBP20.01■□□□□ 0.79
VPS53-201ENST00000291074 NME5P56597 212 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 RALGDSQ12967 914 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 GEN1Q17RS7 908 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 PAOXQ6QHF9 649 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 LRRC43Q8N309 656 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 SLC30A3Q99726 388 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 MUC3BQ9H195 1237 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 VCX3BQ9H321 246 aa20.01■□□□□ 0.79
VPS53-201ENST00000291074 ACOT8O14734 319 aa20■□□□□ 0.79
VPS53-201ENST00000291074 LRP8Q14114 963 aa20■□□□□ 0.79
VPS53-201ENST00000291074 OGFRL1Q5TC84 451 aaPredicted RBP20■□□□□ 0.79
VPS53-201ENST00000291074 NAIF1Q69YI7 327 aaPredicted RBP20■□□□□ 0.79
VPS53-201ENST00000291074 PSAPL1Q6NUJ1 521 aa20■□□□□ 0.79
VPS53-201ENST00000291074 DEFB128Q7Z7B8 93 aa20■□□□□ 0.79
VPS53-201ENST00000291074 PIANPQ8IYJ0 282 aa20■□□□□ 0.79
VPS53-201ENST00000291074 TRPC4APQ8TEL6 797 aa20■□□□□ 0.79
VPS53-201ENST00000291074 GPR21Q99679 349 aa20■□□□□ 0.79
VPS53-201ENST00000291074 COPS7BQ9H9Q2 264 aaPredicted RBP20■□□□□ 0.79
VPS53-201ENST00000291074 FKBPLQ9UIM3 349 aa20■□□□□ 0.79
VPS53-201ENST00000291074 RIMKLBQ9ULI2 386 aa20■□□□□ 0.79
VPS53-201ENST00000291074 RAI2Q9Y5P3 530 aa20■□□□□ 0.79
VPS53-201ENST00000291074 SUPT3HB4E1H0 165 aa20■□□□□ 0.79
VPS53-201ENST00000291074 SUPT3HO75486 399 aa20■□□□□ 0.79
VPS53-201ENST00000291074 TUFMP49411 452 aaKnown RBP20■□□□□ 0.79
VPS53-201ENST00000291074 ALDH7A1P49419 539 aaKnown RBP20■□□□□ 0.79
VPS53-201ENST00000291074 ARF5P84085 180 aa20■□□□□ 0.79
VPS53-201ENST00000291074 MTA1Q13330 715 aa20■□□□□ 0.79
VPS53-201ENST00000291074 TSNQ15631 228 aaKnown RBP20■□□□□ 0.79
VPS53-201ENST00000291074 CXorf57Q6NSI4 855 aaKnown RBP20■□□□□ 0.79
VPS53-201ENST00000291074 AFTPHQ6ULP2 937 aa20■□□□□ 0.79
VPS53-201ENST00000291074 LILRA2Q8N149 483 aa20■□□□□ 0.79
VPS53-201ENST00000291074 CLSTN3Q9BQT9 956 aa20■□□□□ 0.79
VPS53-201ENST00000291074 PCDHAC1Q9H158 963 aa20■□□□□ 0.79
VPS53-201ENST00000291074 AKTIPQ9H8T0 292 aa20■□□□□ 0.79
VPS53-201ENST00000291074 INTS10Q9NVR2 710 aaKnown RBP20■□□□□ 0.79
VPS53-201ENST00000291074 ILVBLA1L0T0 632 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 CDC7O00311 574 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 GPR39O43194 453 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 HOXA2O43364 376 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 OR1I1O60431 355 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 BCAS2O75934 225 aaPredicted RBP19.99■□□□□ 0.79
VPS53-201ENST00000291074 PENKP01210 267 aaPredicted RBP19.99■□□□□ 0.79
VPS53-201ENST00000291074 TAF1AQ15573 450 aaPredicted RBP19.99■□□□□ 0.79
VPS53-201ENST00000291074 USP41Q3LFD5 358 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.99■□□□□ 0.79
VPS53-201ENST00000291074 SPATA24Q86W54 205 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 CLYBLQ8N0X4 340 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 PDZD8Q8NEN9 1154 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 GCNAQ96QF7 691 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 SLC39A3Q9BRY0 314 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 POPDC3Q9HBV1 291 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 DTNAQ9Y4J8 743 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 MKI67P46013 3256 aaKnown RBP19.99■□□□□ 0.79
VPS53-201ENST00000291074 A0A1B0GVM2 712 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 TXNDC9O14530 226 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 PIP5K1BO14986 540 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 NDUFS3O75489 264 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 F11P03951 625 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 UQCRBP14927 111 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 HOXB8P17481 243 aaPredicted RBP19.99■□□□□ 0.79
VPS53-201ENST00000291074 STX5Q13190 355 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 PTPRNQ16849 979 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 KIAA1841Q6NSI8 718 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 PLD4Q96BZ4 506 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 SLC45A3Q96JT2 553 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 CCDC68Q9H2F9 335 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 TFB2MQ9H5Q4 396 aaKnown RBP19.99■□□□□ 0.79
VPS53-201ENST00000291074 UTP6Q9NYH9 597 aaKnown RBP19.99■□□□□ 0.79
VPS53-201ENST00000291074 TRPM5Q9NZQ8 1165 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 C6orf203Q9P0P8 240 aaPredicted RBP19.99■□□□□ 0.79
VPS53-201ENST00000291074 RNF112Q9ULX5 631 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 BTRCQ9Y297 605 aa19.99■□□□□ 0.79
VPS53-201ENST00000291074 NPEPPSL1A6NEC2 478 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms