RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 PLPP4Q5VZY2 271 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 ZNF627Q7L945 461 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 LINGO2Q7L985 606 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 ADAMTS15Q8TE58 950 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 TCEAL3Q969E4 200 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 OTOL1A6NHN0 477 aaPredicted RBP11.36□□□□□ -0.59
PTPN4-201ENST00000263708 PPP1R3GB7ZBB8 358 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 CCNB1P14635 433 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 XIAPP98170 497 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 BEX3Q00994 111 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 SLC6A3Q01959 620 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 UBAP2LQ14157 1087 aaKnown RBP11.36□□□□□ -0.59
PTPN4-201ENST00000263708 NEPROQ6NW34 567 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 BEND4Q6ZU67 534 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 NUP54Q7Z3B4 507 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 THAP5Q7Z6K1 395 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 ABRAQ8N0Z2 381 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 TMLHEQ9NVH6 421 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 DNPEPQ9ULA0 475 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 TRPV2Q9Y5S1 764 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 SPATA31D3P0C874 917 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 CDC25CP30307 473 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 SPATA31D4Q6ZUB0 917 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 TMC3Q7Z5M5 1100 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 SLC22A15Q8IZD6 547 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 FBXO25Q8TCJ0 367 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 METTL8Q9H825 291 aaKnown RBP11.36□□□□□ -0.59
PTPN4-201ENST00000263708 MAP4K5Q9Y4K4 846 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 CCDC163A0A0D9SF12 145 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 TPST2O60704 377 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 ZNF16P17020 682 aaPredicted RBP11.36□□□□□ -0.59
PTPN4-201ENST00000263708 PGDP52209 483 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 BNIP2Q12982 314 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 ZNF697Q5TEC3 545 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 IRGCQ6NXR0 463 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 PTCD3Q96EY7 689 aaKnown RBP11.36□□□□□ -0.59
PTPN4-201ENST00000263708 MAP2P11137 1827 aaKnown RBP11.36□□□□□ -0.59
PTPN4-201ENST00000263708 MTHFD1P11586 935 aaKnown RBP11.36□□□□□ -0.59
PTPN4-201ENST00000263708 SYVN1Q86TM6 617 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 CLIP4Q8N3C7 705 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 LDAHQ9H6V9 325 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 SLC27A5Q9Y2P5 690 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 FKBP7Q9Y680 259 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 WASHC1A8K0Z3 465 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 WASH3PC4AMC7 463 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 NRP2O60462 931 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 KERAO60938 352 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 HSD17B2P37059 387 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 RAB39AQ14964 217 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 WASH2PQ6VEQ5 465 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 INO80EQ8NBZ0 244 aaPredicted RBP11.36□□□□□ -0.59
PTPN4-201ENST00000263708 THRSPQ92748 146 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 SIRPGQ9P1W8 387 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 TLX3O43711 291 aaPredicted RBP11.36□□□□□ -0.59
PTPN4-201ENST00000263708 VIPP01282 170 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 TRBC1P01850 177 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 ZNF823P16415 610 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 SBK1Q52WX2 424 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 ZC3H12AQ5D1E8 599 aaKnown RBP11.36□□□□□ -0.59
PTPN4-201ENST00000263708 SLCO6A1Q86UG4 719 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 C17orf64Q86WR6 236 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 ERGIC2Q96RQ1 377 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 ZNF226Q9NYT6 803 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 DMTF1Q9Y222 760 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 OR2AT4A6NND4 320 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 RGS19P49795 217 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 ACVR2BQ13705 512 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 TNFAIP8L3Q5GJ75 292 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 AAGABQ6PD74 315 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 FAM83AQ86UY5 434 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 OR52K2Q8NGK3 314 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 NFASCO94856 1347 aa11.36□□□□□ -0.59
PTPN4-201ENST00000263708 NPEPPSL1A6NEC2 478 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 ZSCAN5CA6NGD5 496 aaPredicted RBP11.35□□□□□ -0.59
PTPN4-201ENST00000263708 FPGTO14772 594 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 LSM1O15116 133 aaKnown RBP11.35□□□□□ -0.59
PTPN4-201ENST00000263708 GSTT1P30711 240 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 PUM1Q14671 1186 aaKnown RBP eCLIP11.35□□□□□ -0.59
PTPN4-201ENST00000263708 MCOLN2Q8IZK6 566 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 ZSCAN5AQ9BUG6 496 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 MTRRQ9UBK8 725 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 C22orf31O95567 290 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 LIPEQ05469 1076 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 NAE1Q13564 534 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 PCID2Q5JVF3 399 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 FIBCD1Q8N539 461 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 ARL5AQ9Y689 179 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 DGKBQ9Y6T7 804 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 UMODL1Q5DID0 1318 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 PREX2Q70Z35 1606 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 CITO14578 2027 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 EPHB6O15197 1021 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 ZNF20P17024 532 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 MTHFRP42898 656 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 OR8H1Q8NGG4 311 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 RBMX2Q9Y388 322 aaKnown RBP11.35□□□□□ -0.59
PTPN4-201ENST00000263708 RPTORQ8N122 1335 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 PEX14O75381 377 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 GZMAP12544 262 aa11.35□□□□□ -0.59
PTPN4-201ENST00000263708 PRKCDQ05655 676 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms