RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 PITRM1Q5JRX3 1037 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 UXS1Q8NBZ7 420 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 SKA2Q8WVK7 121 aaPredicted RBP12.86□□□□□ -0.35
VAMP4-201ENST00000236192 TNIP3Q96KP6 325 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 EGFL8Q99944 293 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 C17orf62Q9BQA9 187 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 CDADC1Q9BWV3 514 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 GATA5Q9BWX5 397 aaPredicted RBP12.86□□□□□ -0.35
VAMP4-201ENST00000236192 GSDMCQ9BYG8 508 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 PPIL3Q9H2H8 161 aaKnown RBP12.86□□□□□ -0.35
VAMP4-201ENST00000236192 CD93Q9NPY3 652 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 NFKBIL1Q9UBC1 381 aaPredicted RBP12.86□□□□□ -0.35
VAMP4-201ENST00000236192 VPS28Q9UK41 221 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 SLC27A5Q9Y2P5 690 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 PTPRUQ92729 1446 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 PDGFAP04085 211 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 FDX1P10109 184 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 MAGEA2P43356 314 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 ARL5BQ96KC2 179 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 RDH12Q96NR8 316 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 TBCDQ9BTW9 1192 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 POLR3FQ9H1D9 316 aaPredicted RBP12.86□□□□□ -0.35
VAMP4-201ENST00000236192 RSPH9Q9H1X1 276 aaPredicted RBP12.86□□□□□ -0.35
VAMP4-201ENST00000236192 CCM2LQ9NUG4 571 aaPredicted RBP12.86□□□□□ -0.35
VAMP4-201ENST00000236192 GPATCH2LQ9NWQ4 482 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 GLTPQ9NZD2 209 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 H2AFY2Q9P0M6 372 aaPredicted RBP12.86□□□□□ -0.35
VAMP4-201ENST00000236192 RNF112Q9ULX5 631 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 PCDHGB4Q9UN71 923 aa12.86□□□□□ -0.35
VAMP4-201ENST00000236192 TNS3Q68CZ2 1445 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 UBE2QL1A1L167 161 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 NOBOXO60393 691 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 PLATP00750 562 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 IL1R1P14778 569 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 TPI1P60174 286 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 SNRPD2P62316 118 aaKnown RBP12.85□□□□□ -0.35
VAMP4-201ENST00000236192 BCL2A1Q16548 175 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 STRIP1Q5VSL9 837 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 EFHBQ8N7U6 833 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 CNPPD1Q9BV87 410 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 IL22Q9GZX6 179 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 C12orf10Q9HB07 376 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 C14orf119Q9NWQ9 140 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 PIH1D1Q9NWS0 290 aaKnown RBP12.85□□□□□ -0.35
VAMP4-201ENST00000236192 AJAP1Q9UKB5 411 aaPredicted RBP12.85□□□□□ -0.35
VAMP4-201ENST00000236192 RNF6Q9Y252 685 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 PRG3Q9Y2Y8 225 aaPredicted RBP12.85□□□□□ -0.35
VAMP4-201ENST00000236192 ARPC2O15144 300 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 PRAMEF1O95521 474 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 HNRNPLP14866 589 aaKnown RBP eCLIP12.85□□□□□ -0.352e-8■■■□□ 14.6
VAMP4-201ENST00000236192 AP2S1P53680 142 aaPredicted RBP12.85□□□□□ -0.35
VAMP4-201ENST00000236192 SYT16Q17RD7 645 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 PPM1JQ5JR12 505 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 HAGHLQ6PII5 290 aaPredicted RBP12.85□□□□□ -0.35
VAMP4-201ENST00000236192 CASP12Q6UXS9 341 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 LYSMD3Q7Z3D4 306 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 TRPM4Q8TD43 1214 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 TCEAL3Q969E4 200 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 APOL2Q9BQE5 337 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 ACTR8Q9H981 624 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 GGA3Q9NZ52 723 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 PRR12Q9ULL5 1215 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 HACD1B0YJ81 288 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 E5RJQ4 531 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 PPEF1O14829 653 aaPredicted RBP12.85□□□□□ -0.35
VAMP4-201ENST00000236192 C9P02748 559 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 SERPINF2P08697 491 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 MIPP30301 263 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 VPS26BQ4G0F5 336 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 HYIQ5T013 277 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 Q96MT0 163 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 XPR1Q9UBH6 696 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 TMCC3Q9ULS5 477 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 SPDYE2BA6NHP3 402 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 AP2A2O94973 939 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 NDST3O95803 873 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 SPDYE6P0CI01 402 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 ITGA2P17301 1181 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 SNX20Q7Z614 316 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 SNX29P2Q8IUI4 249 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 NAT16Q8N8M0 369 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 CD101Q93033 1021 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 TBCBQ99426 244 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 HOXD1Q9GZZ0 328 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 MTMR4Q9NYA4 1195 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 ADGRE2Q9UHX3 823 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 ACSL5Q9ULC5 683 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 TBX22Q9Y458 520 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 MYH10P35580 1976 aa12.85□□□□□ -0.35
VAMP4-201ENST00000236192 LOC100130705A0A1B0GUX0 176 aa12.84□□□□□ -0.35
VAMP4-201ENST00000236192 HOXC11O43248 304 aaPredicted RBP12.84□□□□□ -0.35
VAMP4-201ENST00000236192 PROS1P07225 676 aa12.84□□□□□ -0.35
VAMP4-201ENST00000236192 CYP3A4P08684 503 aa12.84□□□□□ -0.35
VAMP4-201ENST00000236192 SLC2A2P11168 524 aaPredicted RBP12.84□□□□□ -0.35
VAMP4-201ENST00000236192 NCK1P16333 377 aa12.84□□□□□ -0.35
VAMP4-201ENST00000236192 STOMP27105 288 aa12.84□□□□□ -0.35
VAMP4-201ENST00000236192 SULT1E1P49888 294 aa12.84□□□□□ -0.35
VAMP4-201ENST00000236192 MTMR1Q13613 665 aa12.84□□□□□ -0.35
VAMP4-201ENST00000236192 C6orf141Q5SZD1 244 aa12.84□□□□□ -0.35
VAMP4-201ENST00000236192 AFTPHQ6ULP2 937 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms