RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 SMIM31A0A1B0GVY4 71 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 A0A1W2PPW3 197 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 BOLA2-SMG1P6H3BVE0 249 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 LTA4HP09960 611 aaKnown RBP10.67□□□□□ -0.7
USP28-201ENST00000003302 HGFP14210 728 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 FSHRP23945 695 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 HTR6P50406 440 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 EFEMP1Q12805 493 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 LAPTM5Q13571 262 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 USP41Q3LFD5 358 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 RSPO2Q6UXX9 243 aaPredicted RBP10.67□□□□□ -0.7
USP28-201ENST00000003302 FAM81AQ8TBF8 368 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 TWIST2Q8WVJ9 160 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 TFAP2CQ92754 450 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 CCDC28BQ9BUN5 200 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 RGS18Q9NS28 235 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 H6PDO95479 791 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 LEPRP48357 1165 aaKnown RBP10.67□□□□□ -0.7
USP28-201ENST00000003302 SGSHP51688 502 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 MS4A13Q5J8X5 152 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 TMEM214Q6NUQ4 689 aaKnown RBP10.67□□□□□ -0.7
USP28-201ENST00000003302 GPATCH1Q9BRR8 931 aaKnown RBP10.67□□□□□ -0.7
USP28-201ENST00000003302 PRG3Q9Y2Y8 225 aaPredicted RBP10.67□□□□□ -0.7
USP28-201ENST00000003302 MAGEB16A2A368 324 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 MAN1A2O60476 641 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 GPC4O75487 556 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 RGS2P41220 211 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 KCNQ1P51787 676 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 SLC12A2P55011 1212 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 FBXL22Q6P050 247 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 PLEKHH3Q7Z736 793 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 SLC22A15Q8IZD6 547 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 IMP4Q96G21 291 aaKnown RBP10.67□□□□□ -0.7
USP28-201ENST00000003302 MAF1Q9H063 256 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 GMIPQ9P107 970 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 SUCOQ9UBS9 1254 aaKnown RBP10.67□□□□□ -0.7
USP28-201ENST00000003302 FBXO10Q9UK96 956 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 PADI3Q9ULW8 664 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 RRN3P2A6NIE6 340 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 INPP4BO15327 924 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 NCAM2O15394 837 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 NPHS1O60500 1241 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 FUT4P22083 530 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 OTUD3Q5T2D3 398 aaPredicted RBP10.67□□□□□ -0.7
USP28-201ENST00000003302 KIAA0930Q6ICG6 404 aaPredicted RBP10.67□□□□□ -0.7
USP28-201ENST00000003302 TSGA13Q96PP4 275 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 PLEKHG4BQ96PX9 1271 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 SEMA3CQ99985 751 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 IKZF5Q9H5V7 419 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 ATXN10Q9UBB4 475 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 CROTQ9UKG9 612 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 DOLKQ9UPQ8 538 aa10.67□□□□□ -0.7
USP28-201ENST00000003302 C17orf102A2RUQ5 167 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 KCNH1O95259 989 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 COG7P83436 770 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 TXNL4AP83876 142 aaKnown RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 XIAPP98170 497 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 TIGD2Q4W5G0 525 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 IQSEC1Q6DN90 963 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 TMEM26Q6ZUK4 368 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 CLVS1Q8IUQ0 354 aaPredicted RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 MRPS26Q9BYN8 205 aaKnown RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 ATP13A1Q9HD20 1204 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 SARDHQ9UL12 918 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 ANKRD6Q9Y2G4 727 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 AAR2Q9Y312 384 aaKnown RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 NEUROG3Q9Y4Z2 214 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 CORINQ9Y5Q5 1042 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 OAS3Q9Y6K5 1087 aaKnown RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 GATMP50440 423 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 SERPINH1P50454 418 aaKnown RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 DGKQP52824 942 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 OR4D2P58180 307 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 NKG7Q16617 165 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 TBCELQ5QJ74 424 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 SLC2A7Q6PXP3 512 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 LPCAT2Q7L5N7 544 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 ITIH5Q86UX2 942 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 DHFR2Q86XF0 187 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 ADGRG5Q8IZF4 528 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 TRIML2Q8N7C3 387 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 RTL3Q8N8U3 475 aaKnown RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 TUBGCP3Q96CW5 907 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 COL4A4P53420 1690 aaPredicted RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 UBA6A0AVT1 1052 aaPredicted RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 MROH6A6NGR9 719 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 J3QRK9 145 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 ARPC2O15144 300 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 CLASP2O75122 1294 aaKnown RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 NIPSNAP2O75323 286 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 ZNF37AP17032 561 aaPredicted RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 FMO4P31512 558 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 HADHAP40939 763 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 ALDH3B2P48448 385 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 MLLT6P55198 1093 aaPredicted RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 ARPP19P56211 112 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 RFTN1Q14699 578 aaPredicted RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 LAPTM4AQ15012 233 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 LDLRAP1Q5SW96 308 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 AFMIDQ63HM1 303 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms