RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 LRRC43Q8N309 656 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 CBR4Q8N4T8 237 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 PNPLA1Q8N8W4 532 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 FEM1CQ96JP0 617 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 AGPAT4Q9NRZ5 378 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 POLR3BQ9NW08 1133 aaPredicted RBP20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 GID8Q9NWU2 228 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 RNF181Q9P0P0 153 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 ACTR3BQ9P1U1 418 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 PATJQ8NI35 1801 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 SAC3D1A6NKF1 404 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 AZIN1O14977 448 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 MATN4O95460 622 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 MYF6P23409 242 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 CDH13P55290 713 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 ESRRGP62508 458 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 PLOD1Q02809 727 aaPredicted RBP20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 COQ5Q5HYK3 327 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 LRRTM3Q86VH5 581 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 PTGR2Q8N8N7 351 aaPredicted RBP20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 OR10T2Q8NGX3 314 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 TWIST2Q8WVJ9 160 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 SERPINB11Q96P15 392 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 CYP2S1Q96SQ9 504 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 C8orf4Q9NR00 106 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 MARCH4Q9P2E8 410 aaPredicted RBP20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 AURKCQ9UQB9 309 aa20.11■□□□□ 0.81
SYNGAP1-227ENST00000638142 ZSCAN9O15535 394 aaPredicted RBP20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 B3GAT3O94766 335 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 MMP2P08253 660 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 ZNF865P0CJ78 1059 aaPredicted RBP20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 CAPN3P20807 821 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 FASP25445 335 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 MAXP61244 160 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 BEX3Q00994 111 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 FOXM1Q08050 763 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 SCD5Q86SK9 330 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 PHYKPLQ8IUZ5 450 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 CROCCP3Q8IVE0 287 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 OR52K2Q8NGK3 314 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 LRCH3Q96II8 777 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 C9orf16Q9BUW7 83 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 MID1IP1Q9NPA3 183 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 SMOXQ9NWM0 555 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 FXYD1O00168 92 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 DLGAP1O14490 977 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 PIP5K1BO14986 540 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 C7P10643 843 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 GEN1Q17RS7 908 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 VPS26BQ4G0F5 336 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 FAM219BQ5XKK7 198 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 KANK2Q63ZY3 851 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 EPHX4Q8IUS5 362 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 ADAMTS16Q8TE57 1224 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 TMEM209Q96SK2 561 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 ADI1Q9BV57 179 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 AP5M1Q9H0R1 490 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 IL1RL2Q9HB29 575 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 POPDC3Q9HBV1 291 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 SDR39U1Q9NRG7 319 aaPredicted RBP20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 ZNF510Q9Y2H8 683 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 TRPV2Q9Y5S1 764 aa20.1■□□□□ 0.81
SYNGAP1-227ENST00000638142 ZNF701M0R085 212 aaPredicted RBP20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 TNFRSF10BO14763 440 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 SLC2A3P11169 496 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 BRCC3P46736 316 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 PGFP49763 221 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 DSC2Q02487 901 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 SLC10A7Q0GE19 358 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 SIRPB2Q5JXA9 342 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 KLHL35Q6PF15 583 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 TTC33Q6PID6 262 aaPredicted RBP20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 FAM43BQ6ZT52 329 aaPredicted RBP20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 GPR141Q7Z602 305 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 TRIM74Q86UV6 250 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 TRIM73Q86UV7 250 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 SPPL2CQ8IUH8 684 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 RHEBL1Q8TAI7 183 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 FAM110BQ8TC76 370 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 FNDC8Q8TC99 324 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 CRYL1Q9Y2S2 319 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 PTPRDP23468 1912 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 CCL22O00626 93 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 LBPP18428 481 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 SUOXP51687 545 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 CDH15P55291 814 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 NUP107P57740 925 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 TSPY1Q01534 308 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 MERTKQ12866 999 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 PAN2Q504Q3 1202 aaKnown RBP20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 PIK3R6Q5UE93 754 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 EXT2Q93063 718 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 HMCESQ96FZ2 354 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 CENPNQ96H22 339 aaPredicted RBP20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 MYRFLQ96LU7 910 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 MUC13Q9H3R2 512 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 SP110Q9HB58 689 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 CMTM6Q9NX76 183 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 ZNHIT2Q9UHR6 403 aa20.09■□□□□ 0.81
SYNGAP1-227ENST00000638142 TRIM64A6NGJ6 449 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms