RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 TRIM32Q13049 653 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 CCDC142Q17RM4 750 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 HECTD2Q5U5R9 776 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 IL27RAQ6UWB1 636 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 TMEM110Q86TL2 294 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 GATAD2AQ86YP4 633 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 TMEM126BQ8IUX1 230 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 CEP97Q8IW35 865 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 SCAIQ8N9R8 606 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 AGBL3Q8NEM8 1001 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 SPPL2BQ8TCT7 592 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 SLC10A4Q96EP9 437 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 KCNA7Q96RP8 456 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 NODALQ96S42 347 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 GPR22Q99680 433 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 SPATC1LQ9H0A9 340 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 TUT1Q9H6E5 874 aaKnown RBP11.04□□□□□ -0.64
CLN3-244ENST00000636147 CNGB3Q9NQW8 809 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 PDGFCQ9NRA1 345 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 PIGVQ9NUD9 493 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 LEF1Q9UJU2 399 aaPredicted RBP11.04□□□□□ -0.64
CLN3-244ENST00000636147 ZNF214Q9UL59 606 aaPredicted RBP11.04□□□□□ -0.64
CLN3-244ENST00000636147 FZD10Q9ULW2 581 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 CAB39Q9Y376 341 aaPredicted RBP11.04□□□□□ -0.64
CLN3-244ENST00000636147 PCDHGA7Q9Y5G6 932 aa11.04□□□□□ -0.64
CLN3-244ENST00000636147 OR51F1A6NGY5 319 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 XYLBO75191 536 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 LRIG2O94898 1065 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 BMP10O95393 424 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 GSTT2P0CG29 244 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 GSTT2BP0CG30 244 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 S100A1P23297 94 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 SERPINH1P50454 418 aaKnown RBP11.03□□□□□ -0.64
CLN3-244ENST00000636147 RAD51Q06609 339 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 NFATC3Q12968 1075 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 MARC1Q5VT66 337 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 PPP4R4Q6NUP7 873 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 HFE2Q6ZVN8 426 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 OR10Q1Q8NGQ4 319 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 ZNF597Q96LX8 424 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 ABCG8Q9H221 673 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 NXF3Q9H4D5 531 aaKnown RBP11.03□□□□□ -0.64
CLN3-244ENST00000636147 ZFP14Q9HCL3 533 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 ENTPD7Q9NQZ7 604 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 EIF2B3Q9NR50 452 aaKnown RBP11.03□□□□□ -0.64
CLN3-244ENST00000636147 GNPTGQ9UJJ9 305 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 PDE10AQ9Y233 779 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 HTR3EA5X5Y0 456 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 BTBD19C9JJ37 291 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 DYNC1LI2O43237 492 aaPredicted RBP11.03□□□□□ -0.64
CLN3-244ENST00000636147 NPHS1O60500 1241 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 SLC35E2BP0CK96 405 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 CYP3A5P20815 502 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 GGT5P36269 586 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 PRKG2Q13237 762 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 MADCAM1Q13477 382 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 LAPTM5Q13571 262 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 MEP1AQ16819 746 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 AKAP14Q86UN6 197 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 TMEM102Q8N9M5 508 aaPredicted RBP11.03□□□□□ -0.64
CLN3-244ENST00000636147 KDM1BQ8NB78 822 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 SLC35F5Q8WV83 523 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 RSPH1Q8WYR4 309 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 WDR12Q9GZL7 423 aaKnown RBP11.03□□□□□ -0.64
CLN3-244ENST00000636147 PDZD7Q9H5P4 517 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 RPF2Q9H7B2 306 aaKnown RBP11.03□□□□□ -0.64
CLN3-244ENST00000636147 PARVBQ9HBI1 364 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 CASS4Q9NQ75 786 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 PDLIM7Q9NR12 457 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 C3orf18Q9UK00 162 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 PKP3Q9Y446 797 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 FAM72CH0Y354 149 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 SLC22A2O15244 555 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 SLC22A3O75751 556 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 WDR47O94967 919 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 GPIP06744 558 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 CTSHP09668 335 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 SLC2A3P11169 496 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 PIK3CGP48736 1102 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 C1QTNF8P60827 252 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 MBTD1Q05BQ5 628 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 FSCN1Q16658 493 aaKnown RBP11.03□□□□□ -0.64
CLN3-244ENST00000636147 FAM72AQ5TYM5 149 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 FAM72DQ6L9T8 149 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 NIPAL1Q6NVV3 410 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 UNC93AQ86WB7 457 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 FAM72BQ86X60 149 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 CMTR2Q8IYT2 770 aaKnown RBP11.03□□□□□ -0.64
CLN3-244ENST00000636147 LRRC58Q96CX6 371 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 UGT2B28Q9BY64 529 aa11.03□□□□□ -0.64
CLN3-244ENST00000636147 TRMT6Q9UJA5 497 aaKnown RBP11.03□□□□□ -0.64
CLN3-244ENST00000636147 FFAR3O14843 346 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 TFECO14948 347 aaPredicted RBP11.02□□□□□ -0.64
CLN3-244ENST00000636147 GPR42O15529 346 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 ATG7O95352 703 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 PRKACGP22612 351 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 CLCN5P51795 746 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 OXCT1P55809 520 aa11.02□□□□□ -0.64
CLN3-244ENST00000636147 TXNL4AP83876 142 aaKnown RBP11.02□□□□□ -0.64
CLN3-244ENST00000636147 TRIP4Q15650 581 aaPredicted RBP11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms