RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CACNA2D3Q8IZS8 1091 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 TMEM57Q8N5G2 664 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 OR2AK2Q8NG84 335 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 AFG1LQ8WV93 481 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 THAP4Q8WY91 577 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 SCRN2Q96FV2 425 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 LINC00479Q96M42 142 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 CLSTN3Q9BQT9 956 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 TRIM15Q9C019 465 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 TWSG1Q9GZX9 223 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 TFB2MQ9H5Q4 396 aaKnown RBP2.75□□□□□ -1.97
SCN1A-208ENST00000625916 STN1Q9H668 368 aaKnown RBP2.75□□□□□ -1.97
SCN1A-208ENST00000625916 DDX4Q9NQI0 724 aaKnown RBP2.75□□□□□ -1.97
SCN1A-208ENST00000625916 ALKBH4Q9NXW9 302 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 DLGAP4Q9Y2H0 992 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 C2CD2Q9Y426 696 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 LOXL2Q9Y4K0 774 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 TAF1P21675 1872 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 NDUFAF8A1L188 74 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 IPO5O00410 1097 aaKnown RBP2.74□□□□□ -1.97
SCN1A-208ENST00000625916 PEX12O00623 359 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 ARHGEF9O43307 516 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 CIDEAO60543 219 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 IGHV4-39P01824 125 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 ZNF234Q14588 700 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 NAA25Q14CX7 972 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 VEPH1Q14D04 833 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 ZNF239Q16600 458 aaKnown RBP2.74□□□□□ -1.97
SCN1A-208ENST00000625916 ZFP69Q49AA0 526 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 CCDC38Q502W7 563 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 SLC45A4Q5BKX6 768 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 TTI2Q6NXR4 508 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 ZNF790Q6PG37 636 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 BEST2Q8NFU1 509 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 TMEM190Q8WZ59 177 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 ZNF653Q96CK0 615 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 BBS4Q96RK4 519 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 CD180Q99467 661 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 OPRPNQ99935 248 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-208ENST00000625916 NEURL2Q9BR09 285 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 MROH8Q9H579 483 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 INTS10Q9NVR2 710 aaKnown RBP2.74□□□□□ -1.97
SCN1A-208ENST00000625916 GEMIN8Q9NWZ8 242 aaKnown RBP2.74□□□□□ -1.97
SCN1A-208ENST00000625916 GRHPRQ9UBQ7 328 aa2.74□□□□□ -1.97
SCN1A-208ENST00000625916 TTC7AQ9ULT0 858 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-208ENST00000625916 RRP7AQ9Y3A4 280 aaKnown RBP2.74□□□□□ -1.97
SCN1A-208ENST00000625916 TMEM202A6NGA9 273 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 ZNHIT1O43257 154 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 SYNGR3O43761 229 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 ZNF821O75541 412 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-208ENST00000625916 TK1P04183 234 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 GNB3P16520 340 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 DDX5P17844 614 aaKnown RBP2.73□□□□□ -1.97
SCN1A-208ENST00000625916 EDN2P20800 178 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 AGAP20933 346 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 ADD2P35612 726 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 AMPHP49418 695 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 ACTR2P61160 394 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 TMEM35AQ53FP2 167 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 TCTE1Q5JU00 501 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 LCE3EQ5T5B0 92 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 SERTAD4-AS1Q5TG53 156 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 OR7E24Q6IFN5 339 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 FAM53AQ6NSI3 398 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-208ENST00000625916 JMJD6Q6NYC1 403 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-208ENST00000625916 LINGO2Q7L985 606 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 TRPT1Q86TN4 253 aaKnown RBP2.73□□□□□ -1.97
SCN1A-208ENST00000625916 TMTC1Q8IUR5 882 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 ZCCHC9Q8N567 271 aaKnown RBP2.73□□□□□ -1.97
SCN1A-208ENST00000625916 ANKRD52Q8NB46 1076 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 PIGTQ969N2 578 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 CDK19Q9BWU1 502 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 NDST4Q9H3R1 872 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 MAGEE1Q9HCI5 957 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 BPIFA1Q9NP55 256 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 GPR108Q9NPR9 543 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 RPS10P5Q9NQ39 176 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 SNTG1Q9NSN8 517 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 ZDHHC18Q9NUE0 388 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 IL1RAPL1Q9NZN1 696 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 FBXO9Q9UK97 447 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-208ENST00000625916 DNAJC16Q9Y2G8 782 aa2.73□□□□□ -1.97
SCN1A-208ENST00000625916 MEIOCA2RUB1 952 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 FAM90A7PA6NKC0 464 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 FAM90A22PA8MWA6 464 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 FAM90A12PA8MX19 464 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 FAM90A23PA8MXZ1 464 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 SH2B2O14492 632 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-208ENST00000625916 PRKNO60260 465 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-208ENST00000625916 FAM155BO75949 473 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 SORBS2O94875 1100 aaKnown RBP2.72□□□□□ -1.97
SCN1A-208ENST00000625916 ERVK-10P10266 1014 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 ZNF26P17031 533 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-208ENST00000625916 POLR2CP19387 275 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-208ENST00000625916 MAOAP21397 527 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 POU1F1P28069 291 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 HOXA13P31271 388 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-208ENST00000625916 METAP2P50579 478 aaKnown RBP eCLIP2.72□□□□□ -1.97
SCN1A-208ENST00000625916 GRIK3Q13003 919 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 ITGA9Q13797 1035 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms