RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 CDK16Q00536 496 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 ACTN3Q08043 901 aaPredicted RBP10.53□□□□□ -0.72
VPS11-208ENST00000621676 SMARCB1Q12824 385 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 E2F5Q15329 346 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 DHCR24Q15392 516 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 HECTD2Q5U5R9 776 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 FYB2Q5VWT5 728 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 PTRHD1Q6GMV3 140 aaKnown RBP10.53□□□□□ -0.72
VPS11-208ENST00000621676 PARM1Q6UWI2 310 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 TMEM207Q6UWW9 146 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 LILRA3Q8N6C8 439 aaPredicted RBP10.53□□□□□ -0.72
VPS11-208ENST00000621676 ANKLE1Q8NAG6 615 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 PLD4Q96BZ4 506 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 CLPTM1LQ96KA5 538 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 TRIM55Q9BYV6 548 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 IL1RL2Q9HB29 575 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 BTRCQ9Y297 605 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 SEC16AO15027 2179 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 MYO16Q9Y6X6 1858 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 ILVBLA1L0T0 632 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 SUPT3HB4E1H0 165 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 BTN3A1O00481 513 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 SUPT3HO75486 399 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 NDST3O95803 873 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 SRCP12931 536 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 ETV3P41162 512 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 GRIA4P48058 902 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 SLC1A6P48664 564 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 PPM1FP49593 454 aaPredicted RBP10.53□□□□□ -0.72
VPS11-208ENST00000621676 LIMK2P53671 638 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 HTRA4P83105 476 aaPredicted RBP10.53□□□□□ -0.72
VPS11-208ENST00000621676 PDK4Q16654 411 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 RD3Q7Z3Z2 195 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 SRLQ86TD4 932 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 DEFB119Q8N690 84 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 FBXO27Q8NI29 283 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 KLHL29Q96CT2 875 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 MYRFLQ96LU7 910 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 CPNE1Q99829 537 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 OSBPL6Q9BZF3 934 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 PLA2G2FQ9BZM2 168 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 NMUR2Q9GZQ4 415 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 ZFYVE1Q9HBF4 777 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 CATSPERZQ9NTU4 200 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 TMEM51Q9NW97 253 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 PSD3Q9NYI0 1048 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 ZMYM5Q9UJ78 669 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 GGA2Q9UJY4 613 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 SARDHQ9UL12 918 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 VWA7Q9Y334 891 aa10.53□□□□□ -0.72
VPS11-208ENST00000621676 FNDC1Q4ZHG4 1894 aaPredicted RBP10.52□□□□□ -0.72
VPS11-208ENST00000621676 IGLV3-10A0A075B6K4 115 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 PLIN3O60664 434 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 SLC35E2BP0CK96 405 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 TROVE2P10155 538 aaKnown RBP eCLIP10.52□□□□□ -0.73
VPS11-208ENST00000621676 RFC2P35250 354 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 TSNQ15631 228 aaKnown RBP10.52□□□□□ -0.73
VPS11-208ENST00000621676 CHRNA6Q15825 494 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 LRRC66Q68CR7 880 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 PDPK2PQ6A1A2 396 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 PIWIL4Q7Z3Z4 852 aaKnown RBP10.52□□□□□ -0.73
VPS11-208ENST00000621676 C2orf15Q8WU43 125 aaKnown RBP10.52□□□□□ -0.73
VPS11-208ENST00000621676 CLP1Q92989 425 aaKnown RBP10.52□□□□□ -0.73
VPS11-208ENST00000621676 TMEM109Q9BVC6 243 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 GATA5Q9BWX5 397 aaPredicted RBP10.52□□□□□ -0.73
VPS11-208ENST00000621676 SPATA16Q9BXB7 569 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 POMKQ9H5K3 350 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 ECT2Q9H8V3 914 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 ZNHIT2Q9UHR6 403 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 MSRAQ9UJ68 235 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 CHRM1P11229 460 aaPredicted RBP10.52□□□□□ -0.73
VPS11-208ENST00000621676 ADRA1AP35348 466 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 NNMTP40261 264 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 ARCN1P48444 511 aaKnown RBP10.52□□□□□ -0.73
VPS11-208ENST00000621676 ARL13AQ5H913 290 aaPredicted RBP10.52□□□□□ -0.73
VPS11-208ENST00000621676 CRLF3Q8IUI8 442 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 YAF2Q8IY57 180 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 STK40Q8N2I9 435 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 LRRC39Q96DD0 335 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 MYO19Q96H55 970 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 TDRD1Q9BXT4 1180 aaKnown RBP10.52□□□□□ -0.73
VPS11-208ENST00000621676 LRRC3Q9BY71 257 aa10.52□□□□□ -0.73
VPS11-208ENST00000621676 CNOT1A5YKK6 2376 aaKnown RBP10.52□□□□□ -0.73
VPS11-208ENST00000621676 A0A1B0GTL3 188 aa10.51□□□□□ -0.73
VPS11-208ENST00000621676 NPEPPSL1A6NEC2 478 aa10.51□□□□□ -0.73
VPS11-208ENST00000621676 CCT8L1PA6NM43 557 aa10.51□□□□□ -0.73
VPS11-208ENST00000621676 DCXO43602 365 aa10.51□□□□□ -0.73
VPS11-208ENST00000621676 GREM1O60565 184 aa10.51□□□□□ -0.73
VPS11-208ENST00000621676 EDF1O60869 148 aaKnown RBP10.51□□□□□ -0.73
VPS11-208ENST00000621676 ZWINTO95229 277 aa10.51□□□□□ -0.73
VPS11-208ENST00000621676 MAPKAPK2P49137 400 aa10.51□□□□□ -0.73
VPS11-208ENST00000621676 DGKGP49619 791 aa10.51□□□□□ -0.73
VPS11-208ENST00000621676 SETDB1Q15047 1291 aa10.51□□□□□ -0.73
VPS11-208ENST00000621676 MPPE1Q53F39 396 aa10.51□□□□□ -0.73
VPS11-208ENST00000621676 ISLR2Q6UXK2 745 aa10.51□□□□□ -0.73
VPS11-208ENST00000621676 CROCCP2Q86T23 111 aa10.51□□□□□ -0.73
VPS11-208ENST00000621676 PELI3Q8N2H9 469 aa10.51□□□□□ -0.73
VPS11-208ENST00000621676 CDC26Q8NHZ8 85 aa10.51□□□□□ -0.73
VPS11-208ENST00000621676 EEF1AKMT1Q8WVE0 214 aa10.51□□□□□ -0.73
VPS11-208ENST00000621676 ATP6V1E2Q96A05 226 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms