RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 STYXQ8WUJ0 223 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 CAPSLQ8WWF8 208 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 MFSD14AQ96MC6 490 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 HHATLQ9HCP6 504 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 PCDH12Q9NPG4 1184 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 NTRK1P04629 796 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 SLC6A2P23975 617 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 FAM153CQ494X1 144 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 KLHL26Q53HC5 615 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 ARCQ7LC44 396 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 C7orf57Q8NEG2 295 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 RASSF5Q8WWW0 418 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 SHC3Q92529 594 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 STRADBQ9C0K7 418 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 CKLFQ9UBR5 152 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 PHGDHO43175 533 aaKnown RBP20.45■□□□□ 0.86
UPF1-207ENST00000599848 IRAK1P51617 712 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 ENPEPQ07075 957 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 GALNT3Q14435 633 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 RFTN1Q14699 578 aaPredicted RBP20.45■□□□□ 0.86
UPF1-207ENST00000599848 MEA1Q16626 185 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 TCEAL6Q6IPX3 200 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 ZBTB2Q8N680 514 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 ALLCQ8N6M5 410 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 HIST1H2AAQ96QV6 131 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 NINJ2Q9NZG7 142 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 GGA2Q9UJY4 613 aa20.45■□□□□ 0.86
UPF1-207ENST00000599848 KDM4FA0A1W2PPD8 638 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 RPL22P35268 128 aaKnown RBP20.44■□□□□ 0.86
UPF1-207ENST00000599848 CBX5P45973 191 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 NDST2P52849 883 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 CASP6P55212 293 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 MINDY4Q4G0A6 757 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 NT5DC1Q5TFE4 455 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 SDHAF4Q5VUM1 108 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 JAZF1Q86VZ6 243 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 IRF7Q92985 503 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 MYDGFQ969H8 173 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 MRPL39Q9NYK5 338 aaKnown RBP20.44■□□□□ 0.86
UPF1-207ENST00000599848 ATP9AO75110 1047 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 USP12O75317 370 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 TM7SF2O76062 418 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 IDO1P14902 403 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 LRPAP1P30533 357 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 TNK2Q07912 1038 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 FOXM1Q08050 763 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 MTDHQ86UE4 582 aaKnown RBP20.44■□□□□ 0.86
UPF1-207ENST00000599848 DNAAF5Q86Y56 855 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 NOA1Q8NC60 698 aaKnown RBP20.44■□□□□ 0.86
UPF1-207ENST00000599848 RAD51AP1Q96B01 352 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 SGK2Q9HBY8 427 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 RAI2Q9Y5P3 530 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 IL12BP29460 328 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 ARMC3Q5W041 872 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 ZNF57Q68EA5 555 aaPredicted RBP20.44■□□□□ 0.86
UPF1-207ENST00000599848 BTN2A1Q7KYR7 527 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 OFCC1Q8IZS5 231 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 TNS4Q8IZW8 715 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 UBR7Q8N806 425 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 GPR156Q8NFN8 814 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 OXNAD1Q96HP4 312 aaPredicted RBP20.44■□□□□ 0.86
UPF1-207ENST00000599848 VPS35Q96QK1 796 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 BCO2Q9BYV7 579 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 SRMSQ9H3Y6 488 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 FAM58BPP0C7Q3 252 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 PKMP14618 531 aaKnown RBP20.44■□□□□ 0.86
UPF1-207ENST00000599848 MYL9P24844 172 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 ADRA1BP35368 520 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 SLC5A3P53794 718 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 RPL38P63173 70 aaKnown RBP20.44■□□□□ 0.86
UPF1-207ENST00000599848 PPP3CAQ08209 521 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 EEF1DP3Q658K8 133 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 CES3Q6UWW8 571 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 CELF5Q8N6W0 485 aaKnown RBP20.44■□□□□ 0.86
UPF1-207ENST00000599848 DCAKDQ8WVC6 231 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 ART5Q96L15 291 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 PANX1Q96RD7 426 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 SUSD2Q9UGT4 822 aa20.44■□□□□ 0.86
UPF1-207ENST00000599848 SEMA3DO95025 777 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 ARFIP1P53367 373 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 NRG3P56975 720 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 LPIN1Q14693 890 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 CCNYL2Q5T2Q4 361 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 SLC41A1Q8IVJ1 513 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 BRINP2Q9C0B6 783 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 CPQQ9Y646 472 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 ZNF541Q9H0D2 1346 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 AGRPO00253 132 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 FAM163BP0C2L3 166 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 NQO1P15559 274 aaKnown RBP20.43■□□□□ 0.86
UPF1-207ENST00000599848 ZNF280AP59817 542 aaPredicted RBP20.43■□□□□ 0.86
UPF1-207ENST00000599848 IRGCQ6NXR0 463 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 ZCCHC12Q6PEW1 402 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 LMLNQ96KR4 655 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 TMEM79Q9BSE2 394 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 UNKQ9C0B0 810 aaKnown RBP20.43■□□□□ 0.86
UPF1-207ENST00000599848 CCDC167Q9P0B6 97 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 VWA7Q9Y334 891 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 FER1L4A9Z1Z3 1794 aa20.43■□□□□ 0.86
UPF1-207ENST00000599848 FCHO1O14526 889 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms