RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PAF1Q8N7H5 531 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 COQ10AQ96MF6 247 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 PSKH2Q96QS6 385 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 TEX101Q9BY14 249 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 DHX35Q9H5Z1 703 aaKnown RBP12.52□□□□□ -0.41
TRIM28-212ENST00000597995 SP110Q9HB58 689 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 PHPT1Q9NRX4 125 aaPredicted RBP12.52□□□□□ -0.41
TRIM28-212ENST00000597995 SPATS2LQ9NUQ6 558 aaKnown RBP12.52□□□□□ -0.41
TRIM28-212ENST00000597995 GEMIN8Q9NWZ8 242 aaKnown RBP12.52□□□□□ -0.41
TRIM28-212ENST00000597995 TRNAU1APQ9NX07 287 aaKnown RBP12.52□□□□□ -0.41
TRIM28-212ENST00000597995 MOSPD1Q9UJG1 213 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 NENFQ9UMX5 172 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 PCDHGA3Q9Y5H0 932 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.51□□□□□ -0.41
TRIM28-212ENST00000597995 RHPN2P1A8MT19 583 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 GOLGA6L19H0YKK7 550 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 STMND1H3BQB6 276 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 DAPK3O43293 454 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 PPFIA2O75334 1257 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 SERPING1P05155 500 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 CEACAM5P06731 702 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 ERCC2P18074 760 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 WT1P19544 449 aaPredicted RBP12.51□□□□□ -0.41
TRIM28-212ENST00000597995 TEAD1P28347 426 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 SCNN1BP51168 640 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 ZNF135P52742 658 aaPredicted RBP12.51□□□□□ -0.41
TRIM28-212ENST00000597995 OR1D5P58170 312 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 ILF3Q12906 894 aaKnown RBP eCLIP12.51□□□□□ -0.41
TRIM28-212ENST00000597995 SQSTM1Q13501 440 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 TDRD12Q587J7 1177 aaKnown RBP12.51□□□□□ -0.41
TRIM28-212ENST00000597995 TXNRD3NBQ6F5E7 133 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 ZNF574Q6ZN55 896 aaPredicted RBP12.51□□□□□ -0.41
TRIM28-212ENST00000597995 RFX8Q6ZV50 586 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 NRROSQ86YC3 692 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 CBARPQ8N350 705 aaPredicted RBP12.51□□□□□ -0.41
TRIM28-212ENST00000597995 NPWQ8N729 165 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 ZDHHC1Q8WTX9 485 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 BTBD6Q96KE9 485 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 ZNF599Q96NL3 588 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 TAAR9Q96RI9 348 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 XPO4Q9C0E2 1151 aaKnown RBP12.51□□□□□ -0.41
TRIM28-212ENST00000597995 THAP2Q9H0W7 228 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 CDH19Q9H159 772 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 ADNPQ9H2P0 1102 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 CARS2Q9HA77 564 aaKnown RBP12.51□□□□□ -0.41
TRIM28-212ENST00000597995 RDH14Q9HBH5 336 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 CWC15Q9P013 229 aaKnown RBP12.51□□□□□ -0.41
TRIM28-212ENST00000597995 TAAR2Q9P1P5 351 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 B4GALT6Q9UBX8 382 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 SEPT3Q9UH03 358 aa12.51□□□□□ -0.41
TRIM28-212ENST00000597995 IGHV5-10-1A0A0J9YXX1 117 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 A8MX80 341 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 AGRPO00253 132 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 HTRA2O43464 458 aaPredicted RBP12.5□□□□□ -0.41
TRIM28-212ENST00000597995 PRPSAP2O60256 369 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 SOCS5O75159 536 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 RNF8O76064 485 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 MYBL1P10243 752 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 CCL4P13236 92 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 PTMSP20962 102 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 NFKBIAP25963 317 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 CD1CP29017 333 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 ALDH4A1P30038 563 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 CASP14P31944 242 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 HCAR3P49019 387 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 ATP1A2P50993 1020 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 MAZP56270 477 aaKnown RBP12.5□□□□□ -0.41
TRIM28-212ENST00000597995 NFKB2Q00653 900 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 DPYSQ14117 519 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 LBRQ14739 615 aaKnown RBP12.5□□□□□ -0.41
TRIM28-212ENST00000597995 AMZ1Q400G9 498 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 TMCO4Q5TGY1 634 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 ARHGAP36Q6ZRI8 547 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 HEATR4Q86WZ0 1026 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 PSTKQ8IV42 348 aaKnown RBP12.5□□□□□ -0.41
TRIM28-212ENST00000597995 PELI3Q8N2H9 469 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 LZTR1Q8N653 840 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 HTR3CQ8WXA8 447 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 NKD1Q969G9 470 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 NUS1Q96E22 293 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 TRIM11Q96F44 468 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 NSMCE3Q96MG7 304 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 DPYSL5Q9BPU6 564 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 NUDT22Q9BRQ3 303 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 SLC12A9Q9BXP2 914 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 FRMD8Q9BZ67 464 aaPredicted RBP12.5□□□□□ -0.41
TRIM28-212ENST00000597995 TRIM4Q9C037 500 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 SLC25A18Q9H1K4 315 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 LUC7L2Q9Y383 392 aaKnown RBP12.5□□□□□ -0.41
TRIM28-212ENST00000597995 BZW2Q9Y6E2 419 aaKnown RBP12.5□□□□□ -0.41
TRIM28-212ENST00000597995 SCINQ9Y6U3 715 aa12.5□□□□□ -0.41
TRIM28-212ENST00000597995 SDK2Q58EX2 2172 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 PSMD11O00231 422 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 DFFAO00273 331 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 HEXIM1O94992 359 aaKnown RBP12.49□□□□□ -0.41
TRIM28-212ENST00000597995 ECEL1O95672 775 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 FUCA1P04066 466 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 CYP1A2P05177 515 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 IVLP07476 585 aa12.49□□□□□ -0.41
TRIM28-212ENST00000597995 FGF3P11487 239 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms