RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	C16orf72	Q14CZ0	275 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	TSR1	Q2NL82	804 aa	Known RBP	10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	RAET1G	Q6H3X3	334 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	DOK6	Q6PKX4	331 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	SLC30A9	Q6PML9	568 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776		Q6ZVL8	140 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	USP53	Q70EK8	1073 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	ATPAF2	Q8N5M1	289 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	EXD3	Q8N9H8	876 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	KIAA1524	Q8TCG1	905 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	GPBAR1	Q8TDU6	330 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	ZDHHC1	Q8WTX9	485 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	SPOCK2	Q92563	424 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	USP7	Q93009	1102 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	TRIM11	Q96F44	468 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	CMKLR1	Q99788	373 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	NUDT22	Q9BRQ3	303 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	NAT10	Q9H0A0	1025 aa	Known RBP	10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	PCDH18	Q9HCL0	1135 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	MRPL47	Q9HD33	250 aa	Known RBP	10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	TAAR2	Q9P1P5	351 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	ACSL6	Q9UKU0	697 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	SUFU	Q9UMX1	484 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776	COL6A6	A6NMZ7	2263 aa		10.52	□□□□□ -0.73
LSM4-205	ENST00000597776		A0A1W2PQC6	194 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	RHPN2P1	A8MT19	583 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	C9orf172	C9J069	976 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	GOLGA6L22	H0YM25	854 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	PGLS	O95336	258 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	MBD3	O95983	291 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	MYBL1	P10243	752 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	LIPC	P11150	499 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	CCL4	P13236	92 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	WT1	P19544	449 aa	Predicted RBP	10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	HSPA9	P38646	679 aa	Known RBP	10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	MMP13	P45452	471 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	ILF3	Q12906	894 aa	Known RBP eCLIP	10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	MMRN1	Q13201	1228 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	FILIP1L	Q4L180	1135 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	MARC1	Q5VT66	337 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	ZNF574	Q6ZN55	896 aa	Predicted RBP	10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	ZNF438	Q7Z4V0	828 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	TRIM74	Q86UV6	250 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	C17orf82	Q86X59	251 aa	Predicted RBP	10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	CBARP	Q8N350	705 aa	Predicted RBP	10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	RCBTB1	Q8NDN9	531 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	EXTL1	Q92935	676 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	TMEM159	Q96B96	161 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	SGF29	Q96ES7	293 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	MCCC1	Q96RQ3	725 aa	Predicted RBP	10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	BPIFA3	Q9BQP9	254 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	GSDMC	Q9BYG8	508 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	ISCU	Q9H1K1	167 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	NT5M	Q9NPB1	228 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	CD84	Q9UIB8	345 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	PHTF1	Q9UMS5	762 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	PLEKHM1	Q9Y4G2	1056 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	AHCTF1	Q8WYP5	2266 aa		10.51	□□□□□ -0.73
LSM4-205	ENST00000597776	UNC13C	Q8NB66	2214 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	IGHV5-10-1	A0A0J9YXX1	117 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776		A0A1B0GTH6	734 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776		A0A1W2PQ67	120 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	MFSD11	O43934	449 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	MAP3K6	O95382	1288 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	CPNE6	O95741	557 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	SOD1	P00441	154 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	PDHA1	P08559	390 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	CD48	P09326	243 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	CYP2A6	P11509	494 aa	Predicted RBP	10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	CD1C	P29017	333 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	ADCY8	P40145	1251 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	CTBS	Q01459	385 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	SLC25A11	Q02978	314 aa	Known RBP	10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	NFATC3	Q12968	1075 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	IHH	Q14623	411 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	LINC00303	Q3SY05	128 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	BOLA3	Q53S33	107 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	TDRD12	Q587J7	1177 aa	Known RBP	10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	MANEA	Q5SRI9	462 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	ARMC12	Q5T9G4	340 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	NKAIN2	Q5VXU1	208 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	HGSNAT	Q68CP4	663 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	LRRC66	Q68CR7	880 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	USP45	Q70EL2	814 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	MARK2	Q7KZI7	788 aa	Known RBP	10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	TECPR1	Q7Z6L1	1165 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	PIM3	Q86V86	326 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	NAGS	Q8N159	534 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	BBS5	Q8N3I7	341 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	NSMCE1	Q8WV22	266 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	TEKT4	Q8WW24	435 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	PIH1D2	Q8WWB5	315 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	JPH3	Q8WXH2	748 aa	Predicted RBP	10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	PMEPA1	Q969W9	287 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	SCRN2	Q96FV2	425 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	CCDC74B	Q96LY2	380 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	SEMA3C	Q99985	751 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	THAP2	Q9H0W7	228 aa		10.5	□□□□□ -0.73
LSM4-205	ENST00000597776	ABCG8	Q9H221	673 aa		10.5	□□□□□ -0.73

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